Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K12
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    26   3.0  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   7.0  
SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyce...    25   7.0  
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...    25   9.2  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    25   9.2  
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    25   9.2  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   9.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.2  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    25   9.2  

>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 87  TENCGDLEDPQQKIDAVYDLLMEYLPEA 170
           T NC  L+   + I  ++D L+ +LPE+
Sbjct: 233 TTNCDKLDTLSKSIINIFDYLLSHLPES 260


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = -3

Query: 234  ILQRLLSPFLPCLQTFVHCQRELLVNIPLVSHRLHRFFAVDPLNL 100
            ++++ L P +  L+ F +C  E++  +        R+F +DP  L
Sbjct: 1155 MIEKRLWPTMSPLRQFPNCPSEVIRRVEKKEFPWQRYFDLDPAEL 1199


>SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 109 SKSPQFSVIS---ANIFNKSSFESDPASVVAISFH 14
           ++ P+F  ++     IF KS  ++DPA V    FH
Sbjct: 166 TRDPEFKQLAETITEIFKKSGIQNDPAYVFLNVFH 200


>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 15  WKDIATTEAGSDSKLDLLKIFAEITENCGDLEDPQQKIDA 134
           WK +A  + G    +    +   IT   G LED Q++++A
Sbjct: 100 WKILAPQKEGGGKPVTSGSLHKAITSKWGSLEDFQKEMNA 139


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +1

Query: 196 QTRKKRRKQTLQYRCHRSSSRMWNVLYSLCTRCV 297
           + R+KR K+T +      S+  W++++ + T  V
Sbjct: 181 EAREKRMKETFKDDPEEDSNMAWSIIHKIKTEVV 214


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 512 KYVPDEGVYIGCSFQRYN 459
           KYV D  + I C+  RYN
Sbjct: 179 KYVADNNLNIACTIARYN 196


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +1

Query: 118 SKKSMQSMTY*WNIYQKLPLTVNKGLQTRKKRRKQTLQYRCHRSSSRM 261
           S KS  S T  W+I+Q   LT+       KK        + H  S+ M
Sbjct: 64  SNKSKGSQTLRWSIFQNRTLTIFDVSLNSKKEPLSKFNVKIHFPSNVM 111


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 111  DPQQKIDAVYDLLMEYLPEA 170
            D     D  YD+L E+LPEA
Sbjct: 1163 DQHHPDDKAYDILSEWLPEA 1182


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 159 NIPLVSHRLHRFFAVDPLNLRNSQ*SQRISSTNPVLN 49
           N P VS +  RFF+    NL NS  S  ++  +   N
Sbjct: 99  NTPPVSSQHRRFFSEGSFNLPNSNMSHSLNGDSTASN 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,416
Number of Sequences: 5004
Number of extensions: 35834
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)