Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_K12
(527 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0504 - 18842442-18844668,18845418-18845428 29 3.1
11_01_0150 + 1256029-1256137,1256206-1256247,1256345-1256455,125... 28 4.0
10_01_0028 - 359988-359996,360228-360332,360415-360536,360676-36... 28 4.0
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062... 28 4.0
12_02_0388 - 18486957-18487016,18487286-18489418,18489985-184904... 28 5.3
09_02_0052 - 3616013-3616033,3616116-3616514,3617925-3618094,361... 28 5.3
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510... 27 7.1
03_02_0369 + 7843364-7843631,7844994-7845053,7845659-7845741,784... 27 7.1
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 27 9.3
05_06_0047 + 25166628-25166761,25167028-25167040 27 9.3
01_06_1342 - 36438869-36439459,36439567-36439627,36440751-364411... 27 9.3
>07_03_0504 - 18842442-18844668,18845418-18845428
Length = 745
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +3
Query: 309 ESLSADVEKLKSLRLRLQYTAR*LRLYQKVKRSHTGSKGDDTNSEENKLKIVALKTTSNI 488
+ L DVEKLK + ++L + +L + SH + + T+ E + +++ K + I
Sbjct: 683 QKLKVDVEKLKKVEIKLSMLPKLKKLEIQTHDSHHYQEHEVTHQEHEQKTVISWKKENAI 742
>11_01_0150 +
1256029-1256137,1256206-1256247,1256345-1256455,
1256538-1256600,1256678-1256910,1256999-1257223,
1257319-1257411,1257493-1257591,1257840-1257956
Length = 363
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +3
Query: 12 RWKDIATTEAGSDSKLDLLKIFAEITENCGDLEDPQQKIDAVYDLLMEY 158
+W DI+ TE IFA IT+ + EDP KID D +ME+
Sbjct: 169 KWSDISNTEQEH--------IFASITDKFEN-EDPDIKIDVYKDEIMEH 208
>10_01_0028 -
359988-359996,360228-360332,360415-360536,360676-360763,
360988-361056,361132-361461,361544-361610,361695-361753,
361838-362056,362224-362289,362370-362500,362683-362782,
362864-363001,363111-363218,363627-363723,363806-364257
Length = 719
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 166 KLPLTVNKGLQTRKKRRKQTLQYRCHRSSSRMWNVLYSL 282
K P + TR+ ++ ++ RCH SS+++ LY L
Sbjct: 138 KWPQRYQRNAATRRPDEEEDIKARCHYSSAKVDGTLYCL 176
>04_04_1693 +
35404336-35404515,35405732-35406019,35406189-35406278,
35406487-35406564,35406638-35406718,35407300-35407350,
35407788-35407933,35408169-35408235,35408328-35408387,
35408472-35408501,35408776-35408835,35408936-35409052,
35409790-35409903,35410068-35410166,35410572-35410697,
35410774-35410848,35410958-35411029,35411167-35411277,
35411760-35411843,35413149-35413256,35414207-35414308,
35414393-35414455,35414524-35414598,35414901-35414972,
35415063-35415187,35415251-35415302,35415380-35415448,
35415525-35415540,35415941-35415989,35416607-35417180
Length = 1077
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 243 SLQFSHVECALFALHSLCRKSPESLSADVEKLKSLRLRLQYTAR*LRLYQ 392
S H+E A+ A++ +C PE L DV L + + + R L+ +Q
Sbjct: 141 SNDLDHMEGAMDAIYKICEDVPEELDVDVPGLPERPINV-FMPRLLQFFQ 189
>12_02_0388 - 18486957-18487016,18487286-18489418,18489985-18490484,
18490728-18490899
Length = 954
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Frame = -3
Query: 294 TTSAERIKHIPHARTGAMAPILQRLLSPF--LPCLQTFVHCQRELLVNIPL----VSHRL 133
TT + H P + Q PF +PC +HC+ ELL ++ + H
Sbjct: 844 TTICDSSFHFPSLECLQILGCPQLTTLPFTTVPCNMKVIHCEEELLEHLQWDNANIKHSF 903
Query: 132 HRFFAVDPLN 103
FF V +N
Sbjct: 904 QPFFKVISMN 913
>09_02_0052 -
3616013-3616033,3616116-3616514,3617925-3618094,
3619691-3620732
Length = 543
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = -3
Query: 309 PVIFYTTSAERIKHIPHARTGAMAPILQRLLSP-FLPCLQTFVHCQRELLVNIPLVSHRL 133
PV + +K + H +TG M+P +Q ++ L L+ + C E H+L
Sbjct: 377 PVELLKAYLKEVKSMSHVKTGKMSPGVQNEINERELSALKAVIKCIEE---------HKL 427
Query: 132 HRFFAVDPLNLR 97
+ +DPL R
Sbjct: 428 DEKYPIDPLQRR 439
>04_04_1696 +
35448667-35449641,35449726-35450562,35450667-35451001,
35451371-35451497,35451594-35451752,35451872-35453053,
35453164-35453424,35453513-35453761
Length = 1374
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 51 SKLDLLKIFAEITENCGDLEDPQQKIDAVYDLLME 155
S + +KIF+E+ NCGD P +++ + ++L+E
Sbjct: 772 SLIQHMKIFSEVAINCGD-SLPVKEVSQLEEMLIE 805
>03_02_0369 +
7843364-7843631,7844994-7845053,7845659-7845741,
7845834-7845898,7845965-7845998,7846102-7846172,
7850409-7850532,7851151-7851268,7851803-7851889,
7851972-7852055,7852127-7852209,7852556-7852624
Length = 381
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 99 GDLEDPQQKIDAVYDLLMEYLPEAPADSEQR 191
G++ED QKI A+ D Y+P P++ +++
Sbjct: 160 GNIEDALQKIQAIID-AASYVPPPPSEEQKK 189
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 340 FNFSTSALKDSGDFLHNECRANKAHST 260
F F+ +AL +SG N C+ +K ST
Sbjct: 494 FGFTMAALNESGSVFANPCKGDKNMST 520
>05_06_0047 + 25166628-25166761,25167028-25167040
Length = 48
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 199 TRKKRRKQTLQYRCHRSSSR 258
TR RRK+ Q+RC SSSR
Sbjct: 4 TRAPRRKRQAQHRCTSSSSR 23
>01_06_1342 -
36438869-36439459,36439567-36439627,36440751-36441130,
36441955-36442761
Length = 612
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 309 PVIFYTTSAERIKHIPHARTGAMAPILQRLLSPFLPCLQT 190
P FY+ ++ + PH+ T A A ++ L+P LP + T
Sbjct: 101 PPAFYSYASSSSSYSPHSPTLAQAQLVAHGLAPPLPQIPT 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,774,869
Number of Sequences: 37544
Number of extensions: 218293
Number of successful extensions: 633
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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