Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K12
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016687-10|ABL01527.1|  110|Caenorhabditis elegans Hypothetical...    29   1.6  
Z81124-11|CAB03370.2|  306|Caenorhabditis elegans Hypothetical p...    29   2.1  
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr...    28   3.6  
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ...    28   3.6  
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ...    28   3.6  

>AF016687-10|ABL01527.1|  110|Caenorhabditis elegans Hypothetical
           protein T21D12.14 protein.
          Length = 110

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 226 LQYRCHRSSSRMWNVLYSLCT 288
           LQ RCH  + R WN  Y  CT
Sbjct: 86  LQMRCHYDNERQWNRCYLPCT 106


>Z81124-11|CAB03370.2|  306|Caenorhabditis elegans Hypothetical
           protein T21B4.1 protein.
          Length = 306

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 251 LERWHRYCSVCFLLFFLVCRPLFTVSGSFW 162
           L+ +HR+  VCF+L  ++  P  TVS  FW
Sbjct: 46  LQHFHRF--VCFMLIVILSYPFQTVSLFFW 73


>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
           protein.
          Length = 1651

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 204 PCLQTFVHCQRELLVNIPLVSHRLHRFFAV 115
           PC QTF    + LL NIP  S  + RF +V
Sbjct: 654 PCEQTFSSRVQSLLNNIPFSSQEIDRFESV 683


>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           a protein.
          Length = 1650

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 204 PCLQTFVHCQRELLVNIPLVSHRLHRFFAV 115
           PC QTF    + LL NIP  S  + RF +V
Sbjct: 654 PCEQTFSSRVQSLLNNIPFSSQEIDRFESV 683


>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           c protein.
          Length = 1651

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 204 PCLQTFVHCQRELLVNIPLVSHRLHRFFAV 115
           PC QTF    + LL NIP  S  + RF +V
Sbjct: 654 PCEQTFSSRVQSLLNNIPFSSQEIDRFESV 683


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,140,003
Number of Sequences: 27780
Number of extensions: 198613
Number of successful extensions: 643
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)