Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K12
         (527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   0.84 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   0.84 
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    23   1.9  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    23   1.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 0.84
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 84  ITENCGDLEDPQQKIDAVYDLLMEY 158
           +T N   L DP+  IDAV  +   Y
Sbjct: 267 VTPNLSKLSDPEVWIDAVTQIFFSY 291


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 0.84
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 84  ITENCGDLEDPQQKIDAVYDLLMEY 158
           +T N   L DP+  IDAV  +   Y
Sbjct: 320 VTPNLSKLSDPEVWIDAVTQIFFSY 344


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 194 CRQGRKGESRRCNIG 238
           C +  KGE+  CNIG
Sbjct: 115 CIENAKGETDECNIG 129


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 194 CRQGRKGESRRCNIG 238
           C +  KGE+  CNIG
Sbjct: 115 CIENAKGETDECNIG 129


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 157 IYQKLPLTVNKGLQTRKKRRKQTLQYRCHRSSS 255
           + Q  P+TVN+ L +  +    +   + HRSSS
Sbjct: 255 VQQHQPVTVNRQLNSDVQPGHGSPPVKQHRSSS 287


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 273 KHIPHARTGAMAPILQRLLSP 211
           +HIPHA        + R LSP
Sbjct: 425 RHIPHASVTDSENTVPRYLSP 445


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 213 PFLPCLQTFVHCQRELL 163
           P+  C+Q   H +RELL
Sbjct: 5   PYARCIQERRHIRRELL 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,891
Number of Sequences: 438
Number of extensions: 2216
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)