Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_K11
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 285 3e-78
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 144 5e-36
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 144 5e-36
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 144 5e-36
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 144 5e-36
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 88 6e-19
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 44 1e-05
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 42 5e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 42 7e-05
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ... 27 1.6
SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like |Schiz... 27 2.1
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 26 3.6
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 25 6.3
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo... 25 6.3
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 6.3
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 6.3
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb... 25 6.3
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c... 25 8.4
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 8.4
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 25 8.4
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 25 8.4
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 285 bits (698), Expect = 3e-78
Identities = 144/163 (88%), Positives = 151/163 (92%)
Frame = +1
Query: 10 ESTLHLVLRLRGGMQIFVKDPHWQRPSRSMWSPSDTIENVKAKIQDKEGIPPDPQRLIFA 189
ESTLHLVLRLRGGMQIFVK + + + S SDTI+NVK+KIQDKEGIPPD QRLIFA
Sbjct: 64 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVES-SDTIDNVKSKIQDKEGIPPDQQRLIFA 122
Query: 190 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 369
GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVK+KI
Sbjct: 123 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKI 182
Query: 370 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 498
QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
Sbjct: 183 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 225
Score = 285 bits (698), Expect = 3e-78
Identities = 144/163 (88%), Positives = 151/163 (92%)
Frame = +1
Query: 10 ESTLHLVLRLRGGMQIFVKDPHWQRPSRSMWSPSDTIENVKAKIQDKEGIPPDPQRLIFA 189
ESTLHLVLRLRGGMQIFVK + + + S SDTI+NVK+KIQDKEGIPPD QRLIFA
Sbjct: 140 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVES-SDTIDNVKSKIQDKEGIPPDQQRLIFA 198
Query: 190 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 369
GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVK+KI
Sbjct: 199 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKI 258
Query: 370 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 498
QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
Sbjct: 259 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 301
Score = 285 bits (698), Expect = 3e-78
Identities = 144/163 (88%), Positives = 151/163 (92%)
Frame = +1
Query: 10 ESTLHLVLRLRGGMQIFVKDPHWQRPSRSMWSPSDTIENVKAKIQDKEGIPPDPQRLIFA 189
ESTLHLVLRLRGGMQIFVK + + + S SDTI+NVK+KIQDKEGIPPD QRLIFA
Sbjct: 216 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVES-SDTIDNVKSKIQDKEGIPPDQQRLIFA 274
Query: 190 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 369
GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVK+KI
Sbjct: 275 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKI 334
Query: 370 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 498
QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
Sbjct: 335 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 377
Score = 259 bits (634), Expect = 2e-70
Identities = 131/150 (87%), Positives = 138/150 (92%)
Frame = +1
Query: 49 MQIFVKDPHWQRPSRSMWSPSDTIENVKAKIQDKEGIPPDPQRLIFAGKQLEDGRTLSDY 228
MQIFVK + + + S SDTI+NVK+KIQDKEGIPPD QRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVES-SDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 229 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 408
NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRL
Sbjct: 60 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRL 119
Query: 409 IFAGKQLEDGRTLSDYNIQKESTLHLVLRL 498
IFAGKQLEDGRTLSDYNIQKESTLHLVLRL
Sbjct: 120 IFAGKQLEDGRTLSDYNIQKESTLHLVLRL 149
Score = 144 bits (350), Expect = 5e-36
Identities = 74/91 (81%), Positives = 80/91 (87%)
Frame = +1
Query: 10 ESTLHLVLRLRGGMQIFVKDPHWQRPSRSMWSPSDTIENVKAKIQDKEGIPPDPQRLIFA 189
ESTLHLVLRLRGGMQIFVK + + + S SDTI+NVK+KIQDKEGIPPD QRLIFA
Sbjct: 292 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVES-SDTIDNVKSKIQDKEGIPPDQQRLIFA 350
Query: 190 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 282
GKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 351 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGL 381
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 144 bits (350), Expect = 5e-36
Identities = 70/73 (95%), Positives = 72/73 (98%)
Frame = +1
Query: 280 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 459
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 460 IQKESTLHLVLRL 498
IQKESTLHLVLRL
Sbjct: 61 IQKESTLHLVLRL 73
Score = 119 bits (286), Expect = 3e-28
Identities = 64/89 (71%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Frame = +1
Query: 49 MQIFVKDPHWQRPSRSMWSPSDTIENVKAKIQDKEGIPPDPQRLIFAGKQLEDGRTLSDY 228
MQIFVK + + + S SDTI+NVK+KIQDKEGIPPD QRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVES-SDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 229 NIQKESTLHLVLRLRGG-MQIFVKTLTGK 312
NIQKESTLHLVLRLRGG ++ +K L K
Sbjct: 60 NIQKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 30.3 bits (65), Expect = 0.17
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 10 ESTLHLVLRLRGGM 51
ESTLHLVLRLRGG+
Sbjct: 64 ESTLHLVLRLRGGI 77
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 144 bits (350), Expect = 5e-36
Identities = 70/73 (95%), Positives = 72/73 (98%)
Frame = +1
Query: 280 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 459
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 460 IQKESTLHLVLRL 498
IQKESTLHLVLRL
Sbjct: 61 IQKESTLHLVLRL 73
Score = 119 bits (286), Expect = 3e-28
Identities = 64/89 (71%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Frame = +1
Query: 49 MQIFVKDPHWQRPSRSMWSPSDTIENVKAKIQDKEGIPPDPQRLIFAGKQLEDGRTLSDY 228
MQIFVK + + + S SDTI+NVK+KIQDKEGIPPD QRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVES-SDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 229 NIQKESTLHLVLRLRGG-MQIFVKTLTGK 312
NIQKESTLHLVLRLRGG ++ +K L K
Sbjct: 60 NIQKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 30.3 bits (65), Expect = 0.17
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 10 ESTLHLVLRLRGGM 51
ESTLHLVLRLRGG+
Sbjct: 64 ESTLHLVLRLRGGI 77
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 144 bits (350), Expect = 5e-36
Identities = 70/73 (95%), Positives = 72/73 (98%)
Frame = +1
Query: 280 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 459
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 460 IQKESTLHLVLRL 498
IQKESTLHLVLRL
Sbjct: 61 IQKESTLHLVLRL 73
Score = 118 bits (284), Expect = 5e-28
Identities = 61/77 (79%), Positives = 66/77 (85%)
Frame = +1
Query: 49 MQIFVKDPHWQRPSRSMWSPSDTIENVKAKIQDKEGIPPDPQRLIFAGKQLEDGRTLSDY 228
MQIFVK + + + S SDTI+NVK+KIQDKEGIPPD QRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVES-SDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 229 NIQKESTLHLVLRLRGG 279
NIQKESTLHLVLRLRGG
Sbjct: 60 NIQKESTLHLVLRLRGG 76
Score = 29.9 bits (64), Expect = 0.22
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 10 ESTLHLVLRLRGG 48
ESTLHLVLRLRGG
Sbjct: 64 ESTLHLVLRLRGG 76
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 144 bits (350), Expect = 5e-36
Identities = 70/73 (95%), Positives = 72/73 (98%)
Frame = +1
Query: 280 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 459
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 460 IQKESTLHLVLRL 498
IQKESTLHLVLRL
Sbjct: 61 IQKESTLHLVLRL 73
Score = 118 bits (284), Expect = 5e-28
Identities = 61/77 (79%), Positives = 66/77 (85%)
Frame = +1
Query: 49 MQIFVKDPHWQRPSRSMWSPSDTIENVKAKIQDKEGIPPDPQRLIFAGKQLEDGRTLSDY 228
MQIFVK + + + S SDTI+NVK+KIQDKEGIPPD QRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVES-SDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 229 NIQKESTLHLVLRLRGG 279
NIQKESTLHLVLRLRGG
Sbjct: 60 NIQKESTLHLVLRLRGG 76
Score = 29.9 bits (64), Expect = 0.22
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 10 ESTLHLVLRLRGG 48
ESTLHLVLRLRGG
Sbjct: 64 ESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 88.2 bits (209), Expect = 6e-19
Identities = 38/73 (52%), Positives = 54/73 (73%)
Frame = +1
Query: 280 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 459
M I VKTLTGK I L+++P+D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 460 IQKESTLHLVLRL 498
++ S LHLVL L
Sbjct: 61 LEGGSVLHLVLAL 73
Score = 72.1 bits (169), Expect = 4e-14
Identities = 29/58 (50%), Positives = 42/58 (72%)
Frame = +1
Query: 106 PSDTIENVKAKIQDKEGIPPDPQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 279
P+D + +K ++++KEGIPP QRLI+AGKQ+ D + Y+++ S LHLVL LRGG
Sbjct: 19 PNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1
Query: 7 GESTLHLVLRLRGG 48
G S LHLVL LRGG
Sbjct: 63 GGSVLHLVLALRGG 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 44.0 bits (99), Expect = 1e-05
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +1
Query: 307 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 480
GK LE+EP++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 41.9 bits (94), Expect = 5e-05
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +1
Query: 280 MQIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 456
M + K L + + +DT I +K KIQ ++ ++Q+LI++G+ L D +T+ +Y
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 457 NIQKE 471
NI+++
Sbjct: 61 NIKEQ 65
Score = 38.7 bits (86), Expect = 5e-04
Identities = 20/65 (30%), Positives = 37/65 (56%)
Frame = +1
Query: 49 MQIFVKDPHWQRPSRSMWSPSDTIENVKAKIQDKEGIPPDPQRLIFAGKQLEDGRTLSDY 228
M + K+ Q+ S S I +K KIQ ++ + Q+LI++G+ L D +T+ +Y
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 229 NIQKE 243
NI+++
Sbjct: 61 NIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 41.5 bits (93), Expect = 7e-05
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +1
Query: 280 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 459
+ + +K + + V+ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 460 IQKESTLHLVLRL 498
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
Score = 36.3 bits (80), Expect = 0.003
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +1
Query: 127 VKAKIQDKEGIPPDPQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 270
+K I I + QRLI+AG+ L+D +L Y IQ ++HLV L
Sbjct: 29 LKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76
>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 1.6
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -1
Query: 244 IPSECCNQREYVHLQVVFQQKS 179
+P C+ ++YV LQV++++KS
Sbjct: 316 LPDMNCSTQQYVKLQVIYKEKS 337
>SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 26.6 bits (56), Expect = 2.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 61 VKDPHWQRPSRSMWSPSDTIENVKAKIQDK 150
+K+P S+ MW P+D +NV A K
Sbjct: 88 IKEPRGTMISKDMWDPTDFHKNVYASALSK 117
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 3.6
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +1
Query: 283 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 456
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 457 NIQKESTLHLVL 492
+ T HLV+
Sbjct: 65 DATDLVTFHLVI 76
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 483 VQSGLFLNVVIRESASIFKLFSSKNQSLLIR 391
V+ GL+ N+V+ +++FK F ++ Q L R
Sbjct: 322 VRKGLYKNIVLSGGSTLFKNFGNRLQRDLKR 352
>SPBC83.13 |||mitochondrial tricarboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 25.0 bits (52), Expect = 6.3
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +3
Query: 6 RGIYSSLGAPSQRWNANIRERPSLAKTITLDVEPIRHYRKCESKDSGQRRHSS*SAATDF 185
RGI + A + R N R +L++ + + + E +GQR +S SA
Sbjct: 160 RGINRGVNAVALRQMTNWGSRLALSRFLEKPIRYFTGRTEAEPLTTGQRFVASVSAGALS 219
Query: 186 CW 191
CW
Sbjct: 220 CW 221
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 6.3
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -3
Query: 434 SSSCFPAKISRC*SGGMPSLS*IFAFTFSIVSDGSTSSVMVLPVRVFTNICIP 276
++S P+ S + G P + S++S S SS VLP + T+ P
Sbjct: 204 NTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSSSSVLPTSIITSTSTP 256
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 333 LHLERDGLASEGLHEYLHSTSETEHQVKS 247
L LER L G + Y + +S+ E Q+KS
Sbjct: 542 LELERQDLKQAGENHYSNLSSDYETQIKS 570
>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 6.3
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 301 GSSRIFAFHL*DG-APSEE*IPSECCNQREYVHL 203
GS IF +L G APS E SEC + + +HL
Sbjct: 357 GSDEIFGGYLYFGNAPSREAFHSECVRRVKNLHL 390
>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 329
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 2 HEGNLLFTWCSVSEVECKYS*KTLTGKDHHARC 100
H+GN L+ W S SE+ C+ K L + +A C
Sbjct: 33 HKGNELYIWVSCSEM-CQKRTKHLFRELQNALC 64
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 24.6 bits (51), Expect = 8.4
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 76 WQRPSRSMWSPSDTIEN-VKAKIQDKEGIPPDPQRLIF-AGKQLEDGRTLSDYNIQK 240
+QR ++ ++ I N AK QD E IP D RL A ++ E + D NI K
Sbjct: 1194 YQRLTKEYEMRAEQIRNDYAAKCQD-EPIPDDEARLFMQAQREEEQRKQTQDDNISK 1249
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 289 FVKTLTGKTITLEVEPSDTIE--NVKAKIQDKEG 384
F LT T T+E EP+ TI+ ++A++ +K G
Sbjct: 22 FEDALTFITKTIEQEPNPTIDLFELRAQVYEKSG 55
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 205 DGRTLSDYNIQKESTLHLVLRLR-GGMQIFVKTLTGKTITL 324
DG TL++ N HL++RL+ ++ + +T+TL
Sbjct: 432 DGETLNEINTNNPEREHLIVRLKVDSQKLKIIVEQSQTLTL 472
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.136 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,332
Number of Sequences: 5004
Number of extensions: 43066
Number of successful extensions: 163
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -