Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_K10
(534 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 112 2e-25
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 111 2e-25
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 54 5e-08
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 44 5e-05
Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical pr... 27 6.4
X69016-1|CAA48781.1| 549|Caenorhabditis elegans ced-4 protein. 27 8.5
U21324-2|AAX22294.1| 571|Caenorhabditis elegans Cell death abno... 27 8.5
U21324-1|AAA62564.1| 549|Caenorhabditis elegans Cell death abno... 27 8.5
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 112 bits (269), Expect = 2e-25
Identities = 51/81 (62%), Positives = 65/81 (80%)
Frame = +3
Query: 75 EPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKG 254
E KRPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KG
Sbjct: 128 EEVTKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKG 187
Query: 255 KSRLGALVHRKTCTSVALTNV 317
K+ LG +V RKT +VAL +V
Sbjct: 188 KASLGTVVRRKTTAAVALVDV 208
Score = 67.7 bits (158), Expect = 5e-12
Identities = 25/53 (47%), Positives = 44/53 (83%)
Frame = +2
Query: 326 NRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKLEKAKAREIAQ 484
+++A +K+VE + NF+ER+EE+R+HWGGGV+ KS+A+ K+E+A+AR++ +
Sbjct: 212 DKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSDAKKLKIERARARDLGK 264
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 111 bits (268), Expect = 2e-25
Identities = 50/77 (64%), Positives = 64/77 (83%)
Frame = +3
Query: 87 KRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 266
KRPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ L
Sbjct: 112 KRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASL 171
Query: 267 GALVHRKTCTSVALTNV 317
G +V RKT +VAL +V
Sbjct: 172 GTVVRRKTTAAVALVDV 188
Score = 67.7 bits (158), Expect = 5e-12
Identities = 25/53 (47%), Positives = 44/53 (83%)
Frame = +2
Query: 326 NRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKLEKAKAREIAQ 484
+++A +K+VE + NF+ER+EE+R+HWGGGV+ KS+A+ K+E+A+AR++ +
Sbjct: 192 DKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSDAKKLKIERARARDLGK 244
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 54.4 bits (125), Expect = 5e-08
Identities = 22/56 (39%), Positives = 36/56 (64%)
Frame = +3
Query: 102 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 269
L+ G N TK + + ++++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 44.4 bits (100), Expect = 5e-05
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +3
Query: 99 TLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG-AL 275
TLR G V K + + + + ++A +V PI++ +P +C + +PY + + +LG A+
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127
Query: 276 VHRK 287
HR+
Sbjct: 128 GHRR 131
>Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical
protein T20D3.8 protein.
Length = 282
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -1
Query: 285 YGVQAHPIVIYPSRYSTGLPS 223
YGV+A P+V YP+ STGL S
Sbjct: 155 YGVKA-PVVSYPTSVSTGLSS 174
>X69016-1|CAA48781.1| 549|Caenorhabditis elegans ced-4 protein.
Length = 549
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 379 LIEVGLDSFHYLREGGTVPDSTF 311
LI + DS +L++ GT P STF
Sbjct: 179 LIGINYDSIVWLKDSGTAPKSTF 201
>U21324-2|AAX22294.1| 571|Caenorhabditis elegans Cell death
abnormality protein4, isoform b protein.
Length = 571
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 379 LIEVGLDSFHYLREGGTVPDSTF 311
LI + DS +L++ GT P STF
Sbjct: 179 LIGINYDSIVWLKDSGTAPKSTF 201
>U21324-1|AAA62564.1| 549|Caenorhabditis elegans Cell death
abnormality protein4, isoform a protein.
Length = 549
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 379 LIEVGLDSFHYLREGGTVPDSTF 311
LI + DS +L++ GT P STF
Sbjct: 179 LIGINYDSIVWLKDSGTAPKSTF 201
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,929,320
Number of Sequences: 27780
Number of extensions: 221093
Number of successful extensions: 563
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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