Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K09
         (251 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy...    25   1.2  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   1.2  
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    25   1.5  
SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc...    24   2.7  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    24   3.5  
SPAC23H4.11c |cnl2||centromere localized protein Cnl2|Schizosacc...    24   3.5  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    23   4.7  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    23   4.7  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    23   8.2  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    23   8.2  

>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +1

Query: 49  TRLQTQLRVVRAFKSTLEDLEERLSS 126
           + LQ +L+++R+F  T+E L + LS+
Sbjct: 3   SELQQELQILRSFNYTIEKLTDGLSA 28


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 124 SHSAAELRSRLRAPPQDIAYIDADDVPPATRTETT 228
           SHS A   S L A P   A   +   PP ++ + T
Sbjct: 742 SHSNASTSSSLNAAPNTTAKSSSQTAPPVSKGDAT 776


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 16  RAGQILWIRGLTRLQTQLRVVRAFKSTLEDLEERLSSHS 132
           R G IL + GL+    QLR+ R +     DL+ RL + S
Sbjct: 251 RLGCIL-MDGLSTFYWQLRLERGYTQVYADLQNRLCTSS 288


>SPAC5D6.04 |||auxin family transmembrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 114 LFEVLQRRLERAYHTQLRLQPGQPSDP 34
           +F  L + L  +Y  ++ L P QP DP
Sbjct: 164 IFSQLGQALRWSYGYRILLSPNQPEDP 190


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 1064

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 81 AYHTQLRLQPGQPS 40
          A+HTQL+L  G+P+
Sbjct: 21 AFHTQLKLSQGRPT 34


>SPAC23H4.11c |cnl2||centromere localized protein
           Cnl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 91  STLEDLEERLSSHSAAEL 144
           STL D+EE  +SHSA  L
Sbjct: 93  STLHDVEEFYTSHSAKPL 110


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 37  IRGLTRLQTQLRVVRAFKSTLEDLEERLSSHSAAELRSRLRA 162
           +RG   L  +LR   A      +L       S++E+RSR RA
Sbjct: 443 VRGYLHLADKLRTQVALSDKPVNLHTLYIKASSSEMRSRKRA 484


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 43  GLTRLQTQLRVVRAFKSTLEDLEERLSSHSA 135
           GL  LQ QLR +R   S  EDL ++LS  +A
Sbjct: 130 GLNLLQ-QLRYLRLQLSEKEDLHKKLSVDNA 159


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 80  RTTRSCVCSLVSPLIHRI*PAR 15
           R TR C CS+ S L+ R+  A+
Sbjct: 233 RMTRLCGCSVPSSLMQRLNAAK 254


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 58  QTQLRVVRAFKSTLEDLEERLSSHSAAELRSRLRAPPQ 171
           +T LRVVR    + ED+E  +S  S  E     +  P+
Sbjct: 464 RTGLRVVRVAAKSREDIESSVSFLSLHEQIKNYKFNPE 501


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 652,094
Number of Sequences: 5004
Number of extensions: 6201
Number of successful extensions: 32
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)