Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_K09
(251 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 28 0.91
03_03_0139 + 14769393-14769764,14770113-14770193,14770537-14770737 27 2.1
09_06_0087 + 20771329-20771450,20771462-20771771,20771893-207726... 27 2.8
05_01_0362 - 2832100-2832123,2832566-2832596,2832805-2833541,283... 27 2.8
03_02_0349 - 7722461-7723069,7723494-7724221,7724281-7724641,772... 26 3.7
07_03_0344 - 16976854-16977186,16978920-16979000 25 6.4
02_05_1134 - 34352154-34352375,34353683-34353746,34353820-343548... 25 6.4
01_01_1164 + 9263990-9264409,9264498-9264603,9264825-9264877,926... 25 6.4
10_08_0115 + 14924463-14924939 25 8.4
09_06_0293 + 22086359-22086496,22086604-22087213,22087407-220879... 25 8.4
05_03_0459 - 14284513-14286336 25 8.4
>01_06_1535 +
38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 28.3 bits (60), Expect = 0.91
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 46 LTRLQTQLRVVRAFKSTLEDLEERL--SSHSAAELRSRLRAPPQDIA 180
+ L T + V+ +++TL+D+EERL S A + +L Q++A
Sbjct: 72 MVALDTAEKQVQEYRATLDDMEERLSKSEDERATCQDKLNYVEQELA 118
>03_03_0139 + 14769393-14769764,14770113-14770193,14770537-14770737
Length = 217
Score = 27.1 bits (57), Expect = 2.1
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 4 RGKPRAGQILWIRGLTRLQTQLRVVRA-FKSTLEDLEERLSSHSAAELRSRLRAPP 168
R +PR G L + L R++ QL ++ F L SS SAA + ++LR PP
Sbjct: 46 RREPRRG--LGVAELERIRVQLEAAQSLFMIPPSLLPSSSSSSSAAAVGTQLRPPP 99
>09_06_0087 +
20771329-20771450,20771462-20771771,20771893-20772672,
20772854-20774002
Length = 786
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +1
Query: 22 GQILWIRGLTRLQTQLRVVRAFKSTLEDLEERLSSHSAAELRSRLRAPPQDI 177
G + W G+ ++ Q+R S L E + A L R R P +D+
Sbjct: 148 GVLSWTPGMAAIEQQMRKRALVTSVLSGRREVSPAMVVAALGRRCRVPSEDV 199
>05_01_0362 -
2832100-2832123,2832566-2832596,2832805-2833541,
2834333-2834825,2835762-2835770,2838062-2838561
Length = 597
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +1
Query: 4 RGKPRAGQILWIRGLTRLQTQLRVVRAFKSTLEDLEERLSSHSAAELRSR 153
RG W+R R + +L V + + D ER S AAE++ +
Sbjct: 38 RGAAAGACSSWLRAERRSRRRLAVANCYAAAPRDAVERFPSVRAAEVKGK 87
>03_02_0349 -
7722461-7723069,7723494-7724221,7724281-7724641,
7724751-7725072,7725183-7725661,7726157-7726430,
7726598-7726884,7726966-7727388,7727545-7727890,
7728011-7728328,7729817-7731081
Length = 1803
Score = 26.2 bits (55), Expect = 3.7
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Frame = +1
Query: 70 RVVRAFKSTLEDLEERLS---------SHSAAELRSRLRAPPQDIAYIDADDVPPATRTE 222
R+V AF LE L + S SH+A + RL+ PP A A P + T
Sbjct: 18 RLVEAFVPFLEKLIKNASWRNKAHSKLSHTAKSILDRLQNPPPPAAAAQAPSTPTSPTTP 77
Query: 223 TT 228
T+
Sbjct: 78 TS 79
>07_03_0344 - 16976854-16977186,16978920-16979000
Length = 137
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +1
Query: 46 LTRLQTQLRVVRAFKSTLEDLEERLSSHSAAELRSRLRAPPQDIAYIDADDVPP 207
LT + Q + ++D ++ L SAA++RS L+ ID+ PP
Sbjct: 73 LTDMLAQYKATGEAYVVMDDDDDHLPRVSAADVRSALQMVDDMFDVIDSYSAPP 126
>02_05_1134 -
34352154-34352375,34353683-34353746,34353820-34354859,
34355193-34355261,34355502-34355606,34355992-34356161,
34356244-34356351,34356397-34356525,34356577-34356681,
34357186-34357475,34357575-34357679,34358195-34358289,
34358474-34358569,34358660-34358782,34359120-34359174,
34359254-34359417,34359881-34359971,34360180-34360334,
34360823-34361002,34361314-34361487,34361776-34361917,
34362023-34362325,34362443-34362522
Length = 1354
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 49 TRLQTQLRVVRAFKSTLEDLEERLSSHSAAELRSRLRAPPQDIAY 183
TRL+ +R +RA K+ E E + AE+R + Q+I +
Sbjct: 24 TRLRDMIRAIRACKTAAE--ERAVVRRECAEIREAIGENQQEIRH 66
>01_01_1164 +
9263990-9264409,9264498-9264603,9264825-9264877,
9265249-9265380,9266250-9266372
Length = 277
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 100 EDLEERLSSHSAAELRSRLRAPPQDIAYID 189
E + +RL + S EL L APP AYI+
Sbjct: 153 EFIRKRLDTKSIIELLRGLDAPPGTTAYIE 182
>10_08_0115 + 14924463-14924939
Length = 158
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 103 DLEERLSSHSAAELRSRLRAPPQDIAYIDADDVPP 207
D + L H L + PP+D+A D D PP
Sbjct: 72 DDDAALLLHIGVRLPATATPPPEDVAGDDMIDAPP 106
>09_06_0293 +
22086359-22086496,22086604-22087213,22087407-22087938,
22088617-22089151
Length = 604
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 35 GSEG*PGCRRSCVWYARSSLRWRTSKSG 118
G G G RRSC W R R +T + G
Sbjct: 546 GGGGDLGVRRSCRWVWRGLRRIKTGRRG 573
>05_03_0459 - 14284513-14286336
Length = 607
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 151 RLRAPPQDIAYIDADDVPPATRTETT 228
R PP+ ID D PP R +TT
Sbjct: 65 RQETPPEAATAIDGDVSPPEKRRKTT 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,954,561
Number of Sequences: 37544
Number of extensions: 52865
Number of successful extensions: 265
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -