Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K08
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    27   1.6  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      26   2.2  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    25   3.8  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   5.0  
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    25   6.6  

>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 135 RLFFNDLSNEIS*DLHY*PLEHLPGV 212
           RLF+ DLSNE+  D  +  L + P V
Sbjct: 266 RLFYRDLSNEVIKDTTFQQLANFPNV 291


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +1

Query: 301 FTFAHGFTFNYLDNINDIK 357
           F + +GF+FNYLD++  ++
Sbjct: 271 FFYYYGFSFNYLDSVVSVR 289


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 201 LPGVYASFPLFSYCLSIVSFL 263
           LP  Y  FP FSYCL + +FL
Sbjct: 390 LPLTY--FPSFSYCLELQNFL 408


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +1

Query: 112  IKKLWNFIDFFLMIYLMK*VEIYIINPLSTFPAFTPAFHYFPIVFLL 252
            ++  WN IDFF+++ L   + +Y +  L++    + AF  F  + +L
Sbjct: 1012 LRSTWNCIDFFVLVTLW--INLYAV--LTSHALLSRAFRAFKALRVL 1054


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 193 LSTFPAFTPAFHYFPIVFLLFHFYGYTRHINISFV*FTF 309
           LS  P  T ++HYF     L   YG+ R   + F+  TF
Sbjct: 279 LSQGPIVTKSWHYFHYSEWLHMIYGFLRAQFVFFLLRTF 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,439,929
Number of Sequences: 5004
Number of extensions: 26850
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)