Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K08
         (428 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128034-1|BAC87239.1|  130|Homo sapiens protein ( Homo sapiens ...    33   0.41 

>AK128034-1|BAC87239.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46153 fis, clone TESTI4001037. ).
          Length = 130

 Score = 33.1 bits (72), Expect = 0.41
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 118 KLWNFIDFFLMIYLMK*VEIYIINPLSTFPAFTPAF-HYFPIVFLLFHFYGYTRHINISF 294
           K + F+ FF  ++L      ++ +  S  P+F P+F   FP +F  F+      H N+S 
Sbjct: 22  KFFLFLSFFFFLFLSFSFSFFLFSLPSFLPSFLPSFLPSFPFLFFSFYCDMILAHCNLSL 81

Query: 295 V 297
           +
Sbjct: 82  L 82


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,022,903
Number of Sequences: 237096
Number of extensions: 833138
Number of successful extensions: 865
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3373625546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)