Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K08
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical pr...    33   0.066
Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical pr...    33   0.066
AC006603-7|ABB51201.1|  576|Caenorhabditis elegans Hypothetical ...    30   0.61 
Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z99288-4|CAB63419.1|   76|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z81056-5|CAB02905.2|  307|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical ...    27   7.5  
AC006680-10|AAK72297.2|  335|Caenorhabditis elegans Seven tm rec...    26   10.0 

>Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical
           protein C52A11.4d protein.
          Length = 2491

 Score = 33.5 bits (73), Expect = 0.066
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 196 STFPAFTPAFHY-FPIVFLLFHFYGYTRHINISFV 297
           S F AF P+F + FP+ F +FHF  +  +   SF+
Sbjct: 15  SIFSAFIPSFFFTFPLFFFIFHFSSFLPNPRFSFI 49


>Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical
           protein C52A11.4d protein.
          Length = 2491

 Score = 33.5 bits (73), Expect = 0.066
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 196 STFPAFTPAFHY-FPIVFLLFHFYGYTRHINISFV 297
           S F AF P+F + FP+ F +FHF  +  +   SF+
Sbjct: 15  SIFSAFIPSFFFTFPLFFFIFHFSSFLPNPRFSFI 49


>AC006603-7|ABB51201.1|  576|Caenorhabditis elegans Hypothetical
           protein B0524.7 protein.
          Length = 576

 Score = 30.3 bits (65), Expect = 0.61
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 261 KMKQ*KDNRKIMESWRKRREGAQGVNNVNLNLFH*INH 148
           K K  K  RK++++W+K  +   GV  +N N  H INH
Sbjct: 362 KQKAAKRARKLVKNWKKSAQNKSGVLKINGN--HVINH 397


>Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical
           protein K03D3.14 protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 20/75 (26%), Positives = 37/75 (49%)
 Frame = +1

Query: 73  KKDMSIGCLWKSNIKKLWNFIDFFLMIYLMK*VEIYIINPLSTFPAFTPAFHYFPIVFLL 252
           KK  ++  L  + +  L+ +I F+L I+++    IYI    + F  F P +    +++++
Sbjct: 182 KKIRALTYLDSTQLSTLYTYI-FWLTIFIVVFKVIYISLFTTIFFIFLPQYSIQLLIYII 240

Query: 253 FHFYGYTRHINISFV 297
           F   G T  I I  V
Sbjct: 241 FIVEGLTTPIIIEIV 255


>Z99288-4|CAB63419.1|   76|Caenorhabditis elegans Hypothetical
           protein ZK262.4 protein.
          Length = 76

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 247 LLFHFYGYTRHINISFV*FTFAHGFTFNYLDNINDIKKLID 369
           LLF  +G T       +    A  F+F Y+  INDI K ID
Sbjct: 2   LLFPVFGLTAAFEPDVLLSPPAPFFSFKYISTINDIAKGID 42


>Z81056-5|CAB02905.2|  307|Caenorhabditis elegans Hypothetical
           protein F09F3.7 protein.
          Length = 307

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = -1

Query: 401 IYLIIMLKLKL-SINFFISLILS-K*LKVKP*AKVNYTKLIL 282
           ++L I++ L L SI   ++LIL  K +K+K  A  N+TKL L
Sbjct: 2   VFLNILIPLLLGSIGVILNLILIVKFMKIKKSAVTNFTKLCL 43


>AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical
           protein F02E11.2 protein.
          Length = 514

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 196 STFPAFTPAFHYFPIVFLLFHF 261
           STF  F   F +F  +FL FHF
Sbjct: 385 STFTFFRLIFPFFEFIFLKFHF 406


>AC006680-10|AAK72297.2|  335|Caenorhabditis elegans Seven tm
           receptor protein 41 protein.
          Length = 335

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +1

Query: 130 FIDFFLMIYLMK*VEIYIINPLSTFPAFTPAFHYFPIVF-LLFHF-YGYTRHINISFV*F 303
           +  F+++I     V+          P  T  F  F ++F +L+ F YG    ++I F+  
Sbjct: 99  YAGFYILIVAFAAVQFVYRYLALVNPDLTKWFQKFGVIFWILYPFLYGVVNSLSILFL-- 156

Query: 304 TFAHGFTFNYL 336
           T   GFT +YL
Sbjct: 157 TSPDGFTDDYL 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,586,076
Number of Sequences: 27780
Number of extensions: 140052
Number of successful extensions: 286
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)