Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K04
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    27   1.1  
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    26   2.6  
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    26   2.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   2.6  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    25   5.9  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   5.9  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    24   7.8  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    24   7.8  

>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = +1

Query: 100 ENVKGKVASRSNSTQSFDEALRDASRAASGATSPTIPENKPM---P*TPTV-LQHRDRAP 267
           EN     +S  +S+ S +E  +D S  +   TSP  PE+  +     TP + L+H D   
Sbjct: 241 ENSSITKSSPRSSSSSNNERFKDTSEESIIFTSPNTPEHPSVYQTDITPEIKLEHSDNNS 300

Query: 268 PS 273
           PS
Sbjct: 301 PS 302


>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
 Frame = +3

Query: 201 HYSRKQTYALNANSITAPRPR--AAFS---ITCSF-STDVVSPLTILHGHRHLFE*FLIP 362
           +Y+RK+  A   N   AP+ R    FS   +TC   S+ V     + H H      + I 
Sbjct: 30  YYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIK 89

Query: 363 WGRLSTT 383
           WG  + T
Sbjct: 90  WGLANWT 96


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
 Frame = +3

Query: 201 HYSRKQTYALNANSITAPRPR--AAFS---ITCSF-STDVVSPLTILHGHRHLFE*FLIP 362
           +Y+RK+  A   N   AP+ R    FS   +TC   S+ V     + H H      + I 
Sbjct: 30  YYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIK 89

Query: 363 WGRLSTT 383
           WG  + T
Sbjct: 90  WGLANWT 96


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
 Frame = +1

Query: 1    ARGGITAGVSHKLGQMRNSDSFRSIEERVGTAYENVKGK-VASRSNSTQSFDEALRDASR 177
            A   +T+     +  M+  D F ++E        NV  K ++++++   S +      S 
Sbjct: 823  ASESLTSEKDESIKSMKGIDDFANLEIPGKGIESNVVIKDISNQTHEINSVENKAETVSN 882

Query: 178  AASGATSPTIPENKPMP*TPTVLQHRDRAPPSLLHVHSRRTSFRH 312
              S  T+  IP +      PT++ H    PP  L V +   +F H
Sbjct: 883  N-SKITNFDIPNDATS--LPTIITHPTPPPPPPLPVKTSLNTFSH 924


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 124 SRSNSTQSFDEALRDASRAASGATSPTIPENKP 222
           +R NS+ S   A   AS A   A+   +PE KP
Sbjct: 216 TRRNSSVSSTSASVAASTAPKAASPAVLPEGKP 248


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 168 RESRCERCHLAHYSRKQ 218
           R S C RC+  HYS  Q
Sbjct: 575 RRSNCLRCNAPHYSNMQ 591


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 97  YENVKGKVASRSNSTQSFDEALRDASRAASGATSPTIPENKPMP 228
           + N+K  V S+   T  FD+ALR  S      + P  P  K  P
Sbjct: 608 FTNLKD-VTSKDEITDGFDKALRSNSLRTHRDSRPVQPLLKQRP 650


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 168 RESRCERCHLAHYSRKQTY 224
           +ES  ERCHL + ++ +T+
Sbjct: 770 KESSSERCHLVNLNKWETF 788


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,599,642
Number of Sequences: 5004
Number of extensions: 29450
Number of successful extensions: 93
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)