Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_K04
(405 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0667 - 18513252-18513512 30 0.80
06_03_1089 - 27521291-27522124 28 3.2
06_03_0587 + 22555414-22557231 27 4.3
11_03_0027 + 9078792-9079613 27 5.6
03_01_0289 + 2242584-2242931,2242973-2243005,2244158-2244241,224... 27 7.5
12_02_0702 - 22278513-22278751,22279054-22279889,22279932-222799... 26 9.9
12_01_0652 - 5512187-5512273,5512844-5513950 26 9.9
06_01_1173 + 10014391-10014678,10015478-10017245,10017333-100174... 26 9.9
04_02_0020 - 8610425-8610710,8610716-8611140,8611393-8611463,861... 26 9.9
03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559 26 9.9
>04_03_0667 - 18513252-18513512
Length = 86
Score = 29.9 bits (64), Expect = 0.80
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +1
Query: 1 ARGGITAGVS-HKLGQMRNSDSFRSIEERVGTAYENVKGKV--ASRSNSTQSFDEALRDA 171
A G+ AGVS ++ + R + R RV A E ++G A R+N D+AL
Sbjct: 17 AAAGVVAGVSAYRRNRRRREEEER---RRVEAAVEEMEGWEFEAMRANYLALMDDALAAL 73
Query: 172 SRAASGATSPT 204
S AA+GA PT
Sbjct: 74 SAAAAGA-EPT 83
>06_03_1089 - 27521291-27522124
Length = 277
Score = 27.9 bits (59), Expect = 3.2
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 88 GTAYENVKGKVASRSNSTQSFDEALRDASRAASGATSPTIPENKP 222
G AYE + K S+S+ A A+ AS A SPT P P
Sbjct: 142 GIAYEKKRRKRPPTSSSSSQAAAAAAAATSPASPAASPTPPPPPP 186
>06_03_0587 + 22555414-22557231
Length = 605
Score = 27.5 bits (58), Expect = 4.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 195 LAHYSRKQTYALNANSITAPRPRAAFSIT 281
L H +T A+N N+++ P P + F++T
Sbjct: 314 LGHVPTLETLAVNVNNLSGPVPPSIFNVT 342
>11_03_0027 + 9078792-9079613
Length = 273
Score = 27.1 bits (57), Expect = 5.6
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +1
Query: 115 KVASRSNSTQSFDEALRDASRAASGATSPTIPENKPMP*TPTVLQHRDRAPPSL 276
K+ + SNS+ SF S ++S T+ N P+ TP + PPSL
Sbjct: 33 KLTTNSNSSISFKLFSNTTSSSSSSVTTTASTPNSPV--TPAPVTASSPPPPSL 84
>03_01_0289 +
2242584-2242931,2242973-2243005,2244158-2244241,
2244640-2245782
Length = 535
Score = 26.6 bits (56), Expect = 7.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 207 SRKQTYALNANSITAPRPRAAFSITCSFSTDVVSPLTILH 326
S+ + A++ NS+TA RP +S SFS V T H
Sbjct: 354 SQPPSSAVSQNSVTAARPLRGYSPQNSFSAPVRVQSTSYH 393
>12_02_0702 -
22278513-22278751,22279054-22279889,22279932-22279975,
22280350-22280463
Length = 410
Score = 26.2 bits (55), Expect = 9.9
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = +1
Query: 25 VSHKLGQMRNSDSFRSIEERVGTAYENVKGKVASRSNSTQSFDEALRDASRAASGATSPT 204
+ LG++ ++ EE+ + ++ A RS +T+ A+R + ++SPT
Sbjct: 88 LDQNLGKLELMEAKCMQEEKFNQILQKLEEIEACRSKATEVTIAAIRTTTAILKASSSPT 147
Query: 205 IPENKPMP*TPT 240
P P P TPT
Sbjct: 148 -PMAPPPP-TPT 157
>12_01_0652 - 5512187-5512273,5512844-5513950
Length = 397
Score = 26.2 bits (55), Expect = 9.9
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 22 GVSHKLGQMRNSDSFRSIEERVGTAYENVKGKV 120
GV+ ++G + D+F+ E++VG+A N ++
Sbjct: 331 GVTIRMGCLDQQDAFKLFEDKVGSATINADTRI 363
>06_01_1173 +
10014391-10014678,10015478-10017245,10017333-10017436,
10017632-10017706,10017887-10017918,10019396-10019482,
10020848-10021294,10021477-10021630,10022203-10022329,
10022547-10022632,10022719-10022790,10023083-10023286,
10023732-10024049
Length = 1253
Score = 26.2 bits (55), Expect = 9.9
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +1
Query: 40 GQMRNSDSFRSIEERVGTAY---ENVKGKVASRSNSTQS--FDEALRDASR 177
G+ R S+ R+ + EN+ GKVAS SN+ + E+ RD SR
Sbjct: 517 GEHRKLQESASVHGRIPSTVMMQENLNGKVASSSNNEDAGQIFESSRDVSR 567
>04_02_0020 -
8610425-8610710,8610716-8611140,8611393-8611463,
8611503-8611878
Length = 385
Score = 26.2 bits (55), Expect = 9.9
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = +1
Query: 34 KLGQMRNSDSFRSIEERVGTAYENVKGKVASRSNSTQSFDEALRDASRAASGATSPTIPE 213
+L + S+ I + ++ ENVK + +R + + EA S T+PE
Sbjct: 94 QLASLVPSNETGRIPGQPNSSTENVKA-ITTRGGTNEIAKEAPSSDSTDKEDQPEKTLPE 152
Query: 214 NKPMP*TPTV 243
K P PT+
Sbjct: 153 KKKNPGCPTI 162
>03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559
Length = 789
Score = 26.2 bits (55), Expect = 9.9
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +1
Query: 49 RNSDSFRSIEERVGTAYENVKGKVASRSNSTQSFDEALRDASRAA-SGATSPTIPENKPM 225
RN D + VG KGK S + + +RD AA +GA E +P
Sbjct: 401 RNQDGGAITDALVGEIKAEAKGKTKRASREEEEDGKVVRDRGGAANAGAERRRRREREPA 460
Query: 226 P 228
P
Sbjct: 461 P 461
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,132,534
Number of Sequences: 37544
Number of extensions: 221108
Number of successful extensions: 721
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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