Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K03
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   221   5e-59
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    34   0.012
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.0  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   2.4  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    25   7.2  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.2  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   7.2  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   9.5  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   9.5  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   9.5  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  221 bits (540), Expect = 5e-59
 Identities = 101/177 (57%), Positives = 132/177 (74%)
 Frame = +1

Query: 10  EKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKT 189
           E+LLP ++GNVGFVFT  DL +VR+ ++ N + APARP AIAPL V +PA NTG+ P KT
Sbjct: 74  ERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKT 133

Query: 190 SFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDS 369
           SFFQAL IPTKI++GTIEI +DVH++    KVG SEATLLNMLNISPF+YG+ V  +YD 
Sbjct: 134 SFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQ 193

Query: 370 GTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIA 540
           G +F+P ILD+  EDL    L+  + + A+SL   YPT+ S  HS+ N +KNL+A++
Sbjct: 194 GNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVS 250


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 34.3 bits (75), Expect = 0.012
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 16/128 (12%)
 Frame = +1

Query: 13  KLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAP-ARPGAIAPLSVVIPA----HNTGLG 177
           KL   + G VG +FT     +V     E+ VQ   AR GA+AP + VIPA       G  
Sbjct: 91  KLTKLLHGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIPAGPVYSRAGQI 149

Query: 178 PEKTSFF---------QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI-- 324
           P +             + L +PT +  G + ++ D  +   G ++ + +  LL +  I  
Sbjct: 150 PVEDDILLTHTLEPQVRQLGMPTVLKNGVVTLLADFPLCTEGQQLDSRQTRLLKLFGITA 209

Query: 325 SPFSYGLV 348
           + F  GL+
Sbjct: 210 AEFKVGLL 217


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 248 IISIVPFEILVGMERAWKKEVFSGPRPVL*AGMTTDNGAMAP 123
           IIS  P + L+G+  AW  E  S  R  +    T+    +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 359 TCLTTRPYEKGEMFNMLRRVASEAP 285
           + LT  PYEKGE  N +R   S  P
Sbjct: 279 SALTRLPYEKGEFINFVRYHPSITP 303


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 182 SGPRPVL*AGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRV 54
           +G  PV    +  + G++ P  AGAW L  N L    T   ++
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKM 180


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 427 FLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIA 540
           +L GV   +A    +  PT  S PH +  GF   + IA
Sbjct: 524 YLVGVPLQSATICVVSLPTEDSQPHVLHEGFLGEVCIA 561


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 363 VHLFDNKTIRKGRDVQHVEK 304
           V L D   +RKG DVQ +EK
Sbjct: 289 VLLSDTAGLRKGEDVQEIEK 308


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -3

Query: 195 ERSLLRTKASVMSGNDDRQWSNGSRTSRGLDFVLQQFITHINKISTGEDKANISLD 28
           ++ +L  K  +    D+R       + R LD  LQ    +I +IST  +  N +L+
Sbjct: 271 KQEVLILKEKIKKIEDERMRQMSVSSDRTLDSQLQTVNENITRISTSIELKNTALE 326


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/61 (22%), Positives = 32/61 (52%)
 Frame = +1

Query: 316 LNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASA 495
           L+I  F+ G+ +  +  +G++ +P      P  +   F+A  A+ +++S    YP ++ +
Sbjct: 186 LDIREFNTGMHIINLLLNGSLKSP------PVSISPSFIASAASTSSVSAPSQYPGLSRS 239

Query: 496 P 498
           P
Sbjct: 240 P 240


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 363 VHLFDNKTIRKGRDVQHVEKSSFRSS 286
           VH  D  T+R G  +     SSFR S
Sbjct: 62  VHCLDIPTVRPGSSMSRTSASSFRYS 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,546
Number of Sequences: 5004
Number of extensions: 45974
Number of successful extensions: 142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)