Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_K02
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 42 7e-05
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 31 0.13
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 29 0.39
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 1.6
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 27 2.7
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 3.6
SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ... 26 4.8
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 25 6.3
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.3
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 25 8.3
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 25 8.3
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 41.9 bits (94), Expect = 7e-05
Identities = 27/113 (23%), Positives = 55/113 (48%)
Frame = +2
Query: 206 IDQVEDLRKEITKQPPDSPLSQSQVMVVGELADSVKQSVFQMSTDHRELHATVSRVGKSI 385
++++E + K+ K P + + +V ++ +Q + ++ H +++R GK++
Sbjct: 22 LNELESILKDAKKSCLKDPTTSMKELVA--CSEKTQQVFDDLKRTEKKFHTSLNRFGKTL 79
Query: 386 DRHFIGEYGSVAPKAESFCSVSKRPIMEQAIAQHLFRQGLEEIGDAFVTEANI 544
++ F + + K S KR I + A++ H FRQG E+ F EA I
Sbjct: 80 EKKFNFDLEDI--KLHSSFESKKREI-DTALSLHFFRQGDVELAHLFCKEAGI 129
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 31.1 bits (67), Expect = 0.13
Identities = 18/81 (22%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +2
Query: 119 VKGVEQDLDKAITKFNNLNENTSRVLQDI---IDQVEDLRKEITKQPPDSPLSQSQVMVV 289
++ +D +K + + + ++ +D ++QVEDL KEI + + +++SQ +
Sbjct: 1055 LRKTREDYEKELLRHADARSTLQKLREDYTKALEQVEDLNKEIALK---AGINESQPFPI 1111
Query: 290 GELADSVKQSVFQMSTDHREL 352
E D ++Q V+ + + L
Sbjct: 1112 SEKEDPLRQEVYVLKKQNAML 1132
Score = 29.9 bits (64), Expect = 0.29
Identities = 15/81 (18%), Positives = 40/81 (49%)
Frame = +2
Query: 128 VEQDLDKAITKFNNLNENTSRVLQDIIDQVEDLRKEITKQPPDSPLSQSQVMVVGELADS 307
+E++ + + + E+ S+ QD++ ++E +RKE+ LS ++ ++
Sbjct: 648 LEKNYEVYRNEMTAIQESLSKRNQDLLSEMEAIRKELENSKYQQQLSTDRLTNANNDVEA 707
Query: 308 VKQSVFQMSTDHRELHATVSR 370
K+ ++ + ++ L +SR
Sbjct: 708 FKKEAKELRSINQNLQDIISR 728
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 29.5 bits (63), Expect = 0.39
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +2
Query: 149 AITKFNNLNENTSRVLQDIIDQVEDLRKEITKQPPDSPLSQSQVMVVGELADSVKQSVFQ 328
A T++++LN NT + L +DL KEI Q + Q+++ V EL +SV V +
Sbjct: 231 ATTRYSSLNANTQKFL-------DDLDKEIFSQIQLAEELQTKLGTVSELVESVPNDVAE 283
Query: 329 M 331
+
Sbjct: 284 V 284
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -3
Query: 555 STPVIFASVTNAS-PISSKPCLNKC*AIACSII 460
STP+ ++V N+S PI+S LN AIA S I
Sbjct: 3429 STPITSSTVVNSSTPITSSSVLNSSTAIASSSI 3461
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 26.6 bits (56), Expect = 2.7
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 11 YIHKRSLFHSEVYLIIKYIERRIFVYVLSYPKPWIRVKGVEQDLDKAITKFNNLNEN 181
++H R F + VY IIK R + LS +K DL +I +N+ +EN
Sbjct: 643 FVHNRGRFATYVYFIIKDCVLRTLAHKLSLGTRMKVIKKFGPDL--SIYDYNSRDEN 697
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 446 QSKRIQLLVQLNHILQ*NVCLLICQLSTLLHGAPDDL 336
Q K I +QL ++ NV LL ++S + H P+DL
Sbjct: 3589 QRKPIPQGIQLFETVKVNVELLFRRISVISHNVPEDL 3625
>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 431 ESFCSVSKRPIMEQAIAQHLFRQGLEEIGDAFVTEA 538
E V + + A A FR+ L +GD FV +A
Sbjct: 128 EGSAKVDGKKVKADASAVEAFRKSLTSLGDIFVNDA 163
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Frame = -3
Query: 456 LLLTEQKDSAFG----ATEPYSPIKCLSIDLPTLDTVAWSSR 343
++ E K+ FG +TE Y C SID+P W S+
Sbjct: 1 MVAIENKEVLFGGSLKSTEEYDQFFCPSIDIPKFLFKYWDSK 42
>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 261
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 137 DLDKAITKFNNLNENTSRVLQDIIDQVEDLRKEITKQ 247
D + I+ +N+ TS VLQ++ ++ E+ KE+ K+
Sbjct: 3 DEESHISVLPVMNKQTSLVLQNLKEETENQLKELEKK 39
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 324 NTLCLTESANSPTTIT*LCDNGESGGCFVISFLKSSTWSIMSC 196
NTL T + TT++ N S C I S T S +SC
Sbjct: 571 NTLPPTSQGATSTTVSSASSNFLSSSCTPIDDTNSVTGSTLSC 613
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 260 PLSQSQVMVVGELADSVKQSVFQMSTDHRELHATVSRVGKSIDR 391
P +++ GEL QSV +DHR ++AT +DR
Sbjct: 812 PAWTDRILYRGELVPHSYQSVPLYYSDHRPIYATYEANIVKVDR 855
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,529,336
Number of Sequences: 5004
Number of extensions: 52124
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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