Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K02
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0610 - 22715637-22716797                                         44   1e-04
11_06_0223 - 21419128-21419397,21419493-21419747,21420243-214204...    30   1.2  
02_03_0102 - 15238808-15239437,15241609-15243264                       29   2.1  
12_01_0744 - 6688631-6688660,6689032-6690603,6690697-6691497           29   2.8  
07_03_1359 - 25985936-25986083,25986424-25986782,25987026-259871...    29   2.8  
01_06_1486 - 37709159-37709377,37709558-37709821,37709903-377099...    29   3.7  
11_06_0311 - 22279202-22279690,22279976-22280103,22281249-222813...    28   4.9  

>06_03_0610 - 22715637-22716797
          Length = 386

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 30/143 (20%), Positives = 63/143 (44%), Gaps = 2/143 (1%)
 Frame = +2

Query: 113 IRVKGVEQDLDKAITKFNNLNENTSRVLQDIIDQVEDLRKEITKQPPDSPLSQSQVMVVG 292
           + +  + +  D+ I K  + +     V+  I+ +VE    ++     DS  +     ++ 
Sbjct: 1   MELDSLREAFDRVIEKRASSSAKAQEVIDQIVSEVEQAITKMQMMNTDSMGTADHSSILA 60

Query: 293 ELADSVKQ--SVFQMSTDHRELHATVSRVGKSIDRHFIGEYGSVAPKAESFCSVSKRPIM 466
           EL   + +   + Q+    +EL+  +S+  K +++ F  +        +   S      +
Sbjct: 61  ELKAKLNELAPLNQLEGCQKELNVALSKYLKLLEKSFSPDISKAYRNVDFEAST-----I 115

Query: 467 EQAIAQHLFRQGLEEIGDAFVTE 535
              IA H +RQGL ++GD+FV E
Sbjct: 116 NSIIANHFYRQGLFDLGDSFVRE 138


>11_06_0223 -
           21419128-21419397,21419493-21419747,21420243-21420414,
           21420530-21420757,21420916-21421049,21421309-21421392,
           21421554-21421760,21421871-21422203,21422343-21422449,
           21422823-21422988,21423127-21423230,21423347-21423507,
           21423595-21424495,21424642-21424732,21424837-21425127,
           21425491-21425575,21425665-21425747,21427653-21427773,
           21427785-21428260
          Length = 1422

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 140 LDKAITKFNNLNENTSRVLQDIIDQVEDLRKEITKQPPDSPLSQSQVMVVGELADSVKQS 319
           L   I +F + N+ T  +LQD+   ++  R  +   PP S  S     + G+L  ++K S
Sbjct: 198 LQGLIGRFGSSNKRTINILQDVSGIIKPSRMTLLLGPPSSGKSTLMRALTGKLDKNLKVS 257


>02_03_0102 - 15238808-15239437,15241609-15243264
          Length = 761

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/64 (26%), Positives = 36/64 (56%)
 Frame = +2

Query: 125 GVEQDLDKAITKFNNLNENTSRVLQDIIDQVEDLRKEITKQPPDSPLSQSQVMVVGELAD 304
           GV++  ++  T  NN++ ++  VL+ +  ++E+L  E    P D    +S +  +GE++ 
Sbjct: 517 GVQKTGEEIATALNNMDVSSEYVLK-LRHEIEELCSEAFHAPADREKIKSCLSELGEISA 575

Query: 305 SVKQ 316
           S K+
Sbjct: 576 SFKK 579


>12_01_0744 - 6688631-6688660,6689032-6690603,6690697-6691497
          Length = 800

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +2

Query: 107 PWIRVKGVEQDLDKAITKFNNLNENTSRVLQDIIDQVEDLRKEITKQPPDSPLSQSQVMV 286
           P+   K  + D+DKA+       EN+ + +QD+  +++ + +       D PLS+     
Sbjct: 199 PFNETKKADADMDKAV-------ENSDKTIQDLCTKIDRMLEAFRDTKEDLPLSKDSTRD 251

Query: 287 VGELA 301
           V  L+
Sbjct: 252 VAALS 256


>07_03_1359 -
           25985936-25986083,25986424-25986782,25987026-25987153,
           25987609-25987727,25988253-25988320
          Length = 273

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +2

Query: 182 TSRVLQDIIDQVEDLRKE 235
           T+R+L+D++ QVE LRKE
Sbjct: 78  TTRILKDLLSQVESLRKE 95


>01_06_1486 -
           37709159-37709377,37709558-37709821,37709903-37709995,
           37710387-37710581,37710665-37710763,37710884-37711132,
           37711264-37711467,37711543-37711602,37711731-37711913,
           37712382-37712999,37713101-37713169,37713275-37713853
          Length = 943

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 315 CLTESANSPTTIT*LCDNGESGGCFVISFLKSSTWSIMSCKTLLVFS 175
           C   + +  TT      NG+ G      F+ S+ W++ SC  +LVF+
Sbjct: 223 CSVSTVDCKTTTEAFKINGQHGS----DFINSADWNLASCSRMLVFA 265


>11_06_0311 -
           22279202-22279690,22279976-22280103,22281249-22281355,
           22282799-22282888,22283590-22283660
          Length = 294

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +2

Query: 179 NTSRVLQDIIDQVEDLRKE 235
           + +RVL+D++ QVE LRKE
Sbjct: 104 DAARVLRDLVSQVESLRKE 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,774,765
Number of Sequences: 37544
Number of extensions: 310583
Number of successful extensions: 827
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)