Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K01
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    77   7e-15
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical pr...    28   4.5  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 77.4 bits (182), Expect = 7e-15
 Identities = 52/144 (36%), Positives = 66/144 (45%), Gaps = 1/144 (0%)
 Frame = +3

Query: 135 KNGGTRTVLLKSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 314
           K G  +    K   +  P   +  G       SK V   R  LTPGTV I+LAGRH GKR
Sbjct: 31  KKGEKKPKFTKDTSAKLPKLQR-NGTKFALGHSKTVT-LRKTLTPGTVLIVLAGRHKGKR 88

Query: 315 XXXXXXXXXXXXXF-TGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAHLDDAYFXXX 491
                          TGP   N  PLRRI Q +VI TS KV++   K+P H++D YF   
Sbjct: 89  VVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYFKRK 148

Query: 492 XXXXXXXXXXXQGEDIFATKKEKY 563
                       G++IFA+ K +Y
Sbjct: 149 STAQKT------GKNIFASGKTEY 166


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +3

Query: 180 FYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 314
           FYPT+   + RSHG   +       PN     V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical
           protein F17C11.1 protein.
          Length = 172

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +1

Query: 244 VGRDLTSL--PAQCAFCWR-ADTLASVSCSLECC 336
           V R+ T+L   ++C F W  A T A+ +CS  CC
Sbjct: 74  VNRNCTALVPDSKCVFKWAFATTAAATACSCTCC 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,351,510
Number of Sequences: 27780
Number of extensions: 268037
Number of successful extensions: 791
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)