Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K01
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   1.3  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   2.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   2.3  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   5.3  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 428 SRCSN-DIALRNPAQGTRVESKRSSEE*QTTRQHSNEHDTLASVSARQQNAH 276
           SRC+N D    N       +++ SS+   +  Q++N+H+  A  S++  N H
Sbjct: 412 SRCANFDNQDNNHYNHNHNQARHSSK---SDNQNNNQHNDQAHHSSKSNNRH 460


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 546 TKKEKYVHQSNVRLTRSWS 602
           T  EK+V  +N++  RSWS
Sbjct: 30  TGDEKWVVYNNIKRKRSWS 48


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 546 TKKEKYVHQSNVRLTRSWS 602
           T  EK+V  +N++  RSWS
Sbjct: 151 TGDEKWVVYNNIKRKRSWS 169


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 291 PTECTLCRE*G*VSSY 244
           PTEC  CR  G   +Y
Sbjct: 37  PTECVFCRNNGEEEAY 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,270
Number of Sequences: 438
Number of extensions: 2934
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)