Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J24
         (551 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1061 + 27282979-27286854                                         31   0.81 
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    31   0.81 
05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-23...    27   7.5  
04_01_0136 + 1522008-1522179,1522528-1522608,1522646-1523174,152...    27   10.0 

>06_03_1061 + 27282979-27286854
          Length = 1291

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +3

Query: 135  LE*ENLSPNTRCVPA-ATLENQYLGVVPS---WTTTSLNIR*DCGQSTEPISCKNEKQNN 302
            LE   ++ NT   P  A L+  +L  V S   W   SL++   C Q TEP +C +E   N
Sbjct: 996  LEVSEINANTSSGPINAVLQLHWLKHVSSFHIWAQDSLSVH-PCKQKTEPSACNSEHMVN 1054

Query: 303  S 305
            S
Sbjct: 1055 S 1055


>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = -3

Query: 189  QVLLPEHTWYLATGFLTRECSYSGGDY*KMPYHHAMVSSRRFLSPKVQADF*SWSGGFEP 10
            ++ LP +   L  G +T  CS   G     PYH  M+S    LSP ++A   +    F P
Sbjct: 1513 ELQLPSYVEGLDFGMMTSACSPISGT----PYHQGMMSPSYLLSPDIRASPTAADAQFSP 1568


>05_01_0035 -
           232656-232781,233212-233322,233419-233563,233749-233882,
           234341-234412,234485-234548,234632-234699,234894-235129,
           236857-237166,237495-238460,238752-238931,239041-239346,
           239593-239727,239810-240046,240120-240308,240521-240709,
           240929-241024,241117-241323,241700-241893,242979-243216
          Length = 1400

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 368 EKMPPSKIYNLPVNPR 321
           EK  PSK+Y L +NPR
Sbjct: 138 EKWSPSKVYGLDINPR 153


>04_01_0136 +
           1522008-1522179,1522528-1522608,1522646-1523174,
           1523301-1523616,1523653-1523847
          Length = 430

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 379 KKKTAYQFRQLVLLLICQKDEKKFHSISDD 468
           +    Y F  ++L + C+KDE  +  ++DD
Sbjct: 341 RSSDVYSFGLVLLEIACKKDENSYAQVADD 370


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,503,327
Number of Sequences: 37544
Number of extensions: 316868
Number of successful extensions: 543
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)