Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J23
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo...    26   3.1  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   7.2  
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    25   7.2  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   7.2  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   7.2  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    25   7.2  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   9.5  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   9.5  

>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
           Mag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 18/77 (23%), Positives = 31/77 (40%)
 Frame = +1

Query: 43  HGPGLRDPCEKELVDALGNMPPQKREDLTASAQQFLRQIAFRQIHKVLDMDPLPKVKHAA 222
           H  GL D   K LV  +GN  P +  +     ++ +R +A +Q+H         + K  +
Sbjct: 21  HLSGL-DENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRFKSIS 79

Query: 223 GGWKYPRKRRRSHTDAE 273
              ++P        D E
Sbjct: 80  NNGQFPTPEEIRDMDFE 96


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 227 PPAACFTFGSGSMSSTLCICLNAIC 153
           PP+ C T  SG +S+   I  N  C
Sbjct: 295 PPSPCLTVSSGPLSTASSIPSNCSC 319


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 14  RRSLEGCYLSTGPACATPARRNLSMRSATCHHRNV 118
           +RSLE  Y++ G     P   + S+R+ + HH +V
Sbjct: 153 KRSLESPYVNIGAFRTYPVGNDGSIRTKSRHHPSV 187


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 76   ELVDALGNMPPQKREDLTASAQQFLRQIAFRQIHKV 183
            EL D +  +PP+    L +      R IAF +++K+
Sbjct: 1180 ELCDVISKLPPENFALLDSLLHHLRRIIAFEKVNKM 1215


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -2

Query: 197 GSMSSTLCICLNAICL--RNC*ADAVRSSR 114
           GS+ S  C+CL  +C+   N    A+ S+R
Sbjct: 2   GSLHSIFCVCLILLCIFKENSIVGAINSAR 31


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +1

Query: 415 VLCVLPLHLTSILLSMSYISYVCAFKYIREFTSLCFT 525
           +L  + LH+  I L ++ +S +  +KY   F+++  T
Sbjct: 236 ILSSMVLHIIPITLEIAMVSGILTYKYGPSFSAIAAT 272


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 229  WKYPRKRRRSHTDAEPDQPNGEGKVVKTEEKADASE 336
            + +P   RR+ TD+    PNG  KV   +   +  E
Sbjct: 1547 YDFPELFRRAFTDSWKKVPNGRSKVTIPQNMFECKE 1582


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 89  RSATCHHRNVKI*RHQLNSSSG 154
           RS   HH +V+I  HQ+ +  G
Sbjct: 281 RSGAIHHHDVRIANHQIGTLQG 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,696,458
Number of Sequences: 5004
Number of extensions: 28285
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)