Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_J23
(543 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1134 - 34352154-34352375,34353683-34353746,34353820-343548... 30 1.4
03_05_0085 - 20638769-20639150,20640054-20640286 29 2.4
11_04_0246 - 15311912-15312481 28 5.5
05_07_0217 - 28469229-28469798 28 5.5
04_04_0464 - 25405629-25405665,25406644-25406710,25408112-254083... 28 5.5
02_05_0269 + 27307837-27308424 28 5.5
02_03_0258 - 16930027-16930485,16930686-16930991 28 5.5
01_02_0131 - 11441713-11441728,11441911-11441953,11442324-11442762 28 5.5
03_02_0294 + 7176906-7177532 24 6.9
12_02_0729 + 22611836-22612028,22612297-22612376 27 7.3
10_08_0915 + 21539651-21540226,21540276-21541139 27 7.3
08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767 27 7.3
04_03_0052 + 10257109-10257337,10257580-10257668,10257708-102582... 27 9.7
>02_05_1134 -
34352154-34352375,34353683-34353746,34353820-34354859,
34355193-34355261,34355502-34355606,34355992-34356161,
34356244-34356351,34356397-34356525,34356577-34356681,
34357186-34357475,34357575-34357679,34358195-34358289,
34358474-34358569,34358660-34358782,34359120-34359174,
34359254-34359417,34359881-34359971,34360180-34360334,
34360823-34361002,34361314-34361487,34361776-34361917,
34362023-34362325,34362443-34362522
Length = 1354
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/54 (38%), Positives = 28/54 (51%)
Frame = +1
Query: 64 PCEKELVDALGNMPPQKREDLTASAQQFLRQIAFRQIHKVLDMDPLPKVKHAAG 225
P KELVD L + P +EDLTA + + F Q K+ +D + KV AG
Sbjct: 400 PLTKELVDYLDSADPDFKEDLTAKICSIVEK--FSQ-EKLWYLDQMFKVLSLAG 450
>03_05_0085 - 20638769-20639150,20640054-20640286
Length = 204
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 8 RWRRSLEGCYLSTGPACATPARRNLSMRS 94
RWRR + ++ GPA +PARR+L ++S
Sbjct: 56 RWRRKVP---VTAGPASPSPARRSLRLKS 81
>11_04_0246 - 15311912-15312481
Length = 189
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 306 EDGGEGGRVGEHDNGEE 356
EDGG+GGR G D G E
Sbjct: 85 EDGGDGGREGSGDGGGE 101
>05_07_0217 - 28469229-28469798
Length = 189
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 306 EDGGEGGRVGEHDNGEE 356
EDGG+GGR G D G E
Sbjct: 85 EDGGDGGREGSGDGGGE 101
>04_04_0464 -
25405629-25405665,25406644-25406710,25408112-25408373,
25408989-25409198,25409818-25410006,25410087-25410548,
25410889-25410936,25411972-25412301
Length = 534
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Frame = +1
Query: 223 GGWKYP---RKRRRSHTDA--EPDQPNGEGKVVKTEEKADASE 336
GG+ P RRR+H D E ++ +GEG+V++ E+A A +
Sbjct: 9 GGFNAPYTASARRRNHEDDDDEEEEESGEGRVLEAWERAYADD 51
>02_05_0269 + 27307837-27308424
Length = 195
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 306 EDGGEGGRVGEHDNGEE 356
EDGG+GGR G D G E
Sbjct: 85 EDGGDGGREGSGDGGGE 101
>02_03_0258 - 16930027-16930485,16930686-16930991
Length = 254
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 226 GWKYPR-KRRRSHTDAEPDQPNGEGKVVKTEEKADAS 333
GW PR +RRR T + P +GE V E+ A S
Sbjct: 66 GWGRPRLQRRRMGTTSTPAAADGEAPAVAGEDLASGS 102
>01_02_0131 - 11441713-11441728,11441911-11441953,11442324-11442762
Length = 165
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 306 EDGGEGGRVGEHDNGEE 356
EDGG+GGR G D G E
Sbjct: 85 EDGGDGGREGSGDGGGE 101
>03_02_0294 + 7176906-7177532
Length = 208
Score = 23.8 bits (49), Expect(2) = 6.9
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 306 EDGGEGGRVGEHDN 347
+DGG+ GR G HD+
Sbjct: 123 DDGGDNGRGGGHDD 136
Score = 22.2 bits (45), Expect(2) = 6.9
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +3
Query: 408 DACFVCVATPSNEYLIIDVV 467
D C+V P ++++DVV
Sbjct: 135 DDCYVMKVYPDGSWVVVDVV 154
>12_02_0729 + 22611836-22612028,22612297-22612376
Length = 90
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = +1
Query: 184 LDMDPLPKVKHAAGGWKYPRKRRRSHTDAEPDQPNGEGKVVKTEEKADAS 333
L +DPLP A G W K DA ++ G+ + K D S
Sbjct: 12 LPLDPLPLPDLAGGEWSVKTKEGGGGDDAVEEEDEGKARWRKGRRALDPS 61
>10_08_0915 + 21539651-21540226,21540276-21541139
Length = 479
Score = 27.5 bits (58), Expect = 7.3
Identities = 20/73 (27%), Positives = 32/73 (43%)
Frame = -2
Query: 314 SVFTTLPSPLGWSGSASVCERLRLRGYFQPPAACFTFGSGSMSSTLCICLNAICLRNC*A 135
++FT LP + + +A RLR+ G +PPAA G + L+A+ +
Sbjct: 246 AIFTLLPRGVSGAAAALAGVRLRVAGAPRPPAAGDAAGGRLYACNHRTLLDAVAVSGALG 305
Query: 134 DAVRSSRFCGGML 96
V S + G L
Sbjct: 306 RPVSSVTYSLGRL 318
>08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767
Length = 1041
Score = 27.5 bits (58), Expect = 7.3
Identities = 20/65 (30%), Positives = 24/65 (36%)
Frame = +1
Query: 16 AVAGGLLLEHGPGLRDPCEKELVDALGNMPPQKREDLTASAQQFLRQIAFRQIHKVLDMD 195
A A HG G P LV AL Q+R +AQQ L + VL +
Sbjct: 100 AAAAAAAAAHGAGASPPVSNALVAALKRAQAQQRRGCPEAAQQPLLAVKVELEQLVLSIL 159
Query: 196 PLPKV 210
P V
Sbjct: 160 DDPSV 164
>04_03_0052 +
10257109-10257337,10257580-10257668,10257708-10258289,
10258477-10258668,10259392-10259563,10260190-10260461,
10260682-10260801,10260912-10260968,10261631-10261831,
10262451-10262511,10262712-10263013
Length = 758
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 425 CCHSI*RVSYYRCRTSRMYVLLNIYVNSPL 514
CCHS+ +R +S + V+ I++N PL
Sbjct: 142 CCHSLRDTRNHRWTSSLLEVIHKIHINVPL 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,895,203
Number of Sequences: 37544
Number of extensions: 218981
Number of successful extensions: 857
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -