Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J23
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   1.5  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   8.1  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   8.1  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 227 PPAACFTFGSGSMS 186
           PP  C  F SGS+S
Sbjct: 145 PPTTCLVFSSGSVS 158


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 235 YPRKRRRSHTDAEP 276
           +PR RR + ++AEP
Sbjct: 85  HPRLRREAESEAEP 98


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 14  RRSLEGCYLSTGPACATPARRNLSMRSA 97
           RRS+  C L T  + ++ A    S RSA
Sbjct: 170 RRSVSECSLGTASSTSSTASSRNSDRSA 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,371
Number of Sequences: 438
Number of extensions: 2044
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)