Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_J22
(490 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681... 200 5e-52
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 199 8e-52
05_01_0564 - 4919294-4919391,4919491-4919620,4919700-4919789,491... 127 4e-30
01_01_0608 - 4513604-4513701,4513790-4513919,4514027-4514116,451... 85 4e-17
03_02_0705 - 10545748-10546482 33 0.12
09_06_0275 + 21976990-21977140,21977239-21977388,21977775-219779... 30 1.1
12_02_0870 - 23852923-23853228,23853416-23853728,23853813-238539... 29 2.0
05_07_0125 + 27861368-27862282 28 3.5
03_06_0105 + 31675083-31675313,31676171-31676815 27 8.1
01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240... 27 8.1
>10_06_0131 -
11066033-11066251,11066548-11067012,11067102-11068177,
11068269-11068422,11068511-11068601,11069016-11069152
Length = 713
Score = 200 bits (488), Expect = 5e-52
Identities = 88/148 (59%), Positives = 114/148 (77%)
Frame = +1
Query: 43 VDDTPAEQMKAERDQKIESKNRNNSVEKNLKLWEEMKKGSDLGVQCCVRAKIDMQSMNGC 222
VDDTP EQM++ER +ESK RNN+VE+NL LW+EM GS+ G+QCCVR K+DMQ N
Sbjct: 299 VDDTPKEQMRSERMDGVESKCRNNTVEENLSLWKEMINGSERGMQCCVRGKLDMQDPNKS 358
Query: 223 LRDPTIYRCKPETHPRTGNQYKVYPTYDFACPIVDSVEGVTHVLRTMEYHDRDPQFYWFI 402
LRDP YRC + H R G++YKVYPTYDFACP VD++EGVTH LR+ EYHDR+ Q+Y +
Sbjct: 359 LRDPVYYRCNTDPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRIL 418
Query: 403 EAIGLRKPYIWEYSRLSMTNTV*STRKL 486
+ +G+R+ I+E+SRL+M T+ S RKL
Sbjct: 419 QDMGMRRVEIYEFSRLNMVYTLLSKRKL 446
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 199 bits (486), Expect = 8e-52
Identities = 88/148 (59%), Positives = 113/148 (76%)
Frame = +1
Query: 43 VDDTPAEQMKAERDQKIESKNRNNSVEKNLKLWEEMKKGSDLGVQCCVRAKIDMQSMNGC 222
VDDTP EQM++ER +ESK RNN+V+ NL LW+EM G++ G+QCCVR K+DMQ N
Sbjct: 301 VDDTPKEQMRSERMDGVESKCRNNTVQDNLSLWKEMINGTERGMQCCVRGKLDMQDPNKS 360
Query: 223 LRDPTIYRCKPETHPRTGNQYKVYPTYDFACPIVDSVEGVTHVLRTMEYHDRDPQFYWFI 402
LRDP YRC + H R G++YKVYPTYDFACP VD++EGVTH LR+ EYHDR+ Q+Y +
Sbjct: 361 LRDPVYYRCNTDPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRIL 420
Query: 403 EAIGLRKPYIWEYSRLSMTNTV*STRKL 486
+ +GLR+ I+E+SRL+M TV S RKL
Sbjct: 421 QEMGLRRVEIYEFSRLNMVYTVLSKRKL 448
>05_01_0564 -
4919294-4919391,4919491-4919620,4919700-4919789,
4919882-4919987,4920087-4920187,4920347-4920442,
4920549-4920648,4920761-4920897,4920980-4921111,
4921222-4921320,4921397-4921594,4921715-4921892,
4922020-4922075,4922168-4922320,4922422-4922514,
4922605-4922706,4922817-4922878,4922995-4923090,
4923354-4923453,4923546-4923617,4923728-4923775,
4923853-4923996
Length = 796
Score = 127 bits (307), Expect = 4e-30
Identities = 59/148 (39%), Positives = 96/148 (64%)
Frame = +1
Query: 43 VDDTPAEQMKAERDQKIESKNRNNSVEKNLKLWEEMKKGSDLGVQCCVRAKIDMQSMNGC 222
VD E++K R++++ S R+ +E++LKL+E+M+ G + +R K DMQ+ N
Sbjct: 365 VDHQTPEEIKEYREKQMNSPWRDRPIEESLKLFEDMRHGLVAEGKATLRMKQDMQNDNKN 424
Query: 223 LRDPTIYRCKPETHPRTGNQYKVYPTYDFACPIVDSVEGVTHVLRTMEYHDRDPQFYWFI 402
+ D YR K HP G+++ +YP+YD+A +VDS+E +TH L T+E+ R P +YW +
Sbjct: 425 MADLIAYRIKFTPHPHAGDKWFIYPSYDYAHCLVDSLENITHSLCTLEFDIRRPSYYWLL 484
Query: 403 EAIGLRKPYIWEYSRLSMTNTV*STRKL 486
++ +PY+WEYSRL+++N V S RKL
Sbjct: 485 VSLDQYQPYVWEYSRLNISNNVMSKRKL 512
>01_01_0608 -
4513604-4513701,4513790-4513919,4514027-4514116,
4514225-4514330,4514442-4514542,4514678-4514773,
4514860-4514959,4515133-4515269,4515563-4515661,
4515740-4515937,4516058-4516235,4516635-4516690,
4516781-4516933,4517248-4517340,4517422-4517523,
4517609-4517650,4517812-4517855,4518087-4518186,
4518323-4518394,4518499-4518621,4519309-4519452
Length = 753
Score = 84.6 bits (200), Expect = 4e-17
Identities = 41/107 (38%), Positives = 67/107 (62%)
Frame = +1
Query: 43 VDDTPAEQMKAERDQKIESKNRNNSVEKNLKLWEEMKKGSDLGVQCCVRAKIDMQSMNGC 222
VD AE++K R++K+ S R+ +E++LKL+E+M++G +R K DMQ+ N
Sbjct: 366 VDHQTAEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRGLIAEGAATLRMKQDMQNDNKN 425
Query: 223 LRDPTIYRCKPETHPRTGNQYKVYPTYDFACPIVDSVEGVTHVLRTM 363
+ D YR K HP G+++ +YP+YD+A +VDS+E +TH L +
Sbjct: 426 MSDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCMVDSLENITHSLNRL 472
>03_02_0705 - 10545748-10546482
Length = 244
Score = 33.1 bits (72), Expect = 0.12
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = -2
Query: 453 T*SAVFPNVWLSKSNRFYE----PVKLWVSIMVFH 361
T S FP +W++K R++E P+K+WVS H
Sbjct: 78 TFSGTFPRLWITKCTRYFEFYGMPMKMWVSWASMH 112
>09_06_0275 +
21976990-21977140,21977239-21977388,21977775-21977951,
21978073-21978161,21978259-21978323,21978445-21978547,
21979042-21979152,21979306-21979374,21979558-21979614
Length = 323
Score = 29.9 bits (64), Expect = 1.1
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Frame = +1
Query: 136 LWEEMK--KGSDLGVQCCVRAKID-MQSMNGCL-RDPT----IYRCKPETHPRTGNQYKV 291
LW+ +K K + GV+ C R K+ + NG L +PT +R P N+ +V
Sbjct: 224 LWKTIKINKLTFQGVKLCNRCKVPTINQENGILGTEPTETLLTFRSDEVLRPSHKNKRQV 283
Query: 292 YPTYDFACPIVDSVEGVTHVLRTMEYH 372
Y + C S +G +++ +YH
Sbjct: 284 YFGQNLVCKESLSAKGKGRIIKNKQYH 310
>12_02_0870 -
23852923-23853228,23853416-23853728,23853813-23853938,
23854038-23854243,23854311-23854443,23854607-23854688,
23854785-23854914,23855034-23855126,23855211-23855333,
23855786-23855977,23858230-23858394,23858697-23858768,
23858826-23858945,23859873-23859949,23860032-23860398,
23860738-23861871
Length = 1212
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +1
Query: 67 MKAERDQKIESKNRNNSVEKNLKLWEEMKKGSDLGVQCCV--RAKIDMQSMNGCLRDPTI 240
MKA R + + K + V + +W + G++CCV ++ Q M G + I
Sbjct: 53 MKAIRARARKYKKLKDKVPASSHIWRKELGSRSKGLKCCVCLKSVSSPQYMGGVIHQCDI 112
Query: 241 YRCKPETHPR-TGNQYK 288
C HP +GN +K
Sbjct: 113 --CGATAHPSCSGNAHK 127
>05_07_0125 + 27861368-27862282
Length = 304
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 324 GFCRRSDSCSPYHGIP*SRPTILLVH 401
G CR D CS H P PTI+L +
Sbjct: 25 GACRHGDRCSRLHNRPTVSPTIVLAN 50
>03_06_0105 + 31675083-31675313,31676171-31676815
Length = 291
Score = 27.1 bits (57), Expect = 8.1
Identities = 21/94 (22%), Positives = 40/94 (42%)
Frame = +1
Query: 43 VDDTPAEQMKAERDQKIESKNRNNSVEKNLKLWEEMKKGSDLGVQCCVRAKIDMQSMNGC 222
VD AE+ + KN+N+SV+KN ++++ L V+ I G
Sbjct: 78 VDVKRAERRHDHKQTSPSIKNQNDSVQKNQFIFQKKVFVGGLHETVTVKDLISYFEKFGT 137
Query: 223 LRDPTIYRCKPETHPRTGNQYKVYPTYDFACPIV 324
+ D + R + R G + + +++ C I+
Sbjct: 138 ITDAVVMRNRTTNRAR-GFGFISFDSHEAVCKIL 170
>01_06_0946 +
33220910-33222221,33223373-33223734,33223863-33224073,
33224174-33224411,33224492-33224642,33224733-33224997,
33231775-33231820,33232167-33232815,33232883-33233384,
33235023-33235360,33235466-33235676,33235769-33235992,
33236042-33236115,33236147-33236234,33236316-33236612
Length = 1655
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 327 IHDGTCKIIRRVYFILVSSAWMSFWFTP 244
+ D T ++R F+ ++ AW SFW+ P
Sbjct: 264 VADATAGQVQR--FVWINGAWSSFWYYP 289
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,423,369
Number of Sequences: 37544
Number of extensions: 281925
Number of successful extensions: 720
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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