Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_J20
(493 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 204 6e-54
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 203 1e-53
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 203 1e-53
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc... 30 0.22
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 29 0.50
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb... 27 2.0
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 27 2.0
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 26 3.5
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 4.7
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 25 8.2
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 204 bits (498), Expect = 6e-54
Identities = 92/138 (66%), Positives = 115/138 (83%)
Frame = +2
Query: 8 KLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLC 187
KLCKV+RV G K VP+LVTHDGRT+RYPDPLIKVND+++L++ TNKI FIKFD+
Sbjct: 122 KLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQV 181
Query: 188 MITGGRNLGRVGTIVSRERHPGSFDIVHVKDSTGHTFATRLNNVFIIGKGTKAYISLPRG 367
M+TGGRN+GRVGTIV RE H GSF+I+HVKD+ FATRL+NVF+IG+ K++ISLP+G
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKG 241
Query: 368 KGVRLTIAEERDKRIAAK 421
KGV+L+I EERD+R A K
Sbjct: 242 KGVKLSITEERDRRRALK 259
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 203 bits (496), Expect = 1e-53
Identities = 92/138 (66%), Positives = 115/138 (83%)
Frame = +2
Query: 8 KLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLC 187
KLCKV+RV G K VP+LVTHDGRT+RYPDPLIKVND+++L++ TNKI FIKFD+
Sbjct: 122 KLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQV 181
Query: 188 MITGGRNLGRVGTIVSRERHPGSFDIVHVKDSTGHTFATRLNNVFIIGKGTKAYISLPRG 367
M+TGGRN+GRVGTIV RE H GSF+I+HVKD+ FATRL+NVF+IG+ K++ISLP+G
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKG 241
Query: 368 KGVRLTIAEERDKRIAAK 421
KGV+L+I EERD+R A K
Sbjct: 242 KGVKLSITEERDRRRALK 259
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 203 bits (496), Expect = 1e-53
Identities = 92/138 (66%), Positives = 115/138 (83%)
Frame = +2
Query: 8 KLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLC 187
KLCKV+RV G K VP+LVTHDGRT+RYPDPLIKVND+++L++ TNKI FIKFD+
Sbjct: 122 KLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQV 181
Query: 188 MITGGRNLGRVGTIVSRERHPGSFDIVHVKDSTGHTFATRLNNVFIIGKGTKAYISLPRG 367
M+TGGRN+GRVGTIV RE H GSF+I+HVKD+ FATRL+NVF+IG+ K++ISLP+G
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKG 241
Query: 368 KGVRLTIAEERDKRIAAK 421
KGV+L+I EERD+R A K
Sbjct: 242 KGVKLSITEERDRRRALK 259
>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 29.9 bits (64), Expect = 0.22
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 336 PLPIMNTLFNLVANVCPVESLTCTMSKEPGWRSR 235
P N + NV V+ +TC + + PGW+ R
Sbjct: 329 PQDAANNIIRYAQNVGAVDDITCLVVRLPGWKKR 362
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 28.7 bits (61), Expect = 0.50
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 103 HQGERLGAARHLHQQDHGLHQVRLRQPLHD 192
H G LGA +H H + G H V P++D
Sbjct: 175 HHGPTLGAKQHSHSHEDGAHGVH-EHPVYD 203
>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 26.6 bits (56), Expect = 2.0
Identities = 16/62 (25%), Positives = 25/62 (40%)
Frame = +2
Query: 104 IKVNDSVQLDISTNKIMDFIKFDSGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHVKDS 283
IK+++ S NKI+DF+K D NL + L ++ H + K
Sbjct: 129 IKLSNKNGQSASKNKILDFLKSDKENLISGDDDQELIDEDELLDESAHDNVLKVPECKPE 188
Query: 284 TG 289
G
Sbjct: 189 PG 190
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 26.6 bits (56), Expect = 2.0
Identities = 25/112 (22%), Positives = 45/112 (40%)
Frame = +2
Query: 68 HDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMITGGRNLGRVGTIVSRERH 247
HDGR+L+ P + V + ST + D +K +L T + G I++
Sbjct: 581 HDGRSLKTIIPQVNPRRLVLIHASTEEKED-MKKTCASLSAFTKDVYIPNYGEIINVSID 639
Query: 248 PGSFDIVHVKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGVRLTIAEERD 403
+F + D + T++ N + K IS P + + E++D
Sbjct: 640 VNAFSLKLADDLIKNLIWTKVGNCEVSHMLAKVEISKPSEEEDKKEEVEKKD 691
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 25.8 bits (54), Expect = 3.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 164 KFDSGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHVKDSTG 289
KF+ LC + G L R+G + E GS D+V + G
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVVETIEIGG 357
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 4.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 221 GTIVSRERHPGSFDIVHVKDSTGHTFATRLNN 316
G I RE+ P + I H STG T+ N+
Sbjct: 55 GVISYREKFPMDYHIWHTAPSTGKTYLQPWND 86
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 24.6 bits (51), Expect = 8.2
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -2
Query: 159 KSMILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTL 16
K LL+E+SS E+ T+ S YRS Y L TL
Sbjct: 661 KIQSLLIELSSHEENLTISSEKIYRSFLSRISEHYNELRNVTTVLGTL 708
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,594,906
Number of Sequences: 5004
Number of extensions: 29980
Number of successful extensions: 90
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -