Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J19
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    28   1.1  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   5.7  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         25   5.7  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    25   7.5  

>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/54 (25%), Positives = 32/54 (59%)
 Frame = +1

Query: 358 FAHSIGIIISLREIF*FGSRSQRLSI*STNNFIDLIIAITFSKYFFNDYYYNIL 519
           F HS+G  +   E     + ++R+ I + N+   + I+  +S YF+++Y++++L
Sbjct: 142 FYHSLGFDLETAE----NTGNKRVIIHTENDLQTVQISNKYSPYFYSNYFWDLL 191


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 40  RCIWRKQTQCEIRAWRTERSC*NFRRSS 123
           RCIWRK  +C   A+ +ER+   FR  S
Sbjct: 163 RCIWRKGKKCH-SAYISERTKPIFRSES 189


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 316 WKDRQFPIYTNAMVFAHSIGIII 384
           W    FP Y++  V AHS+G ++
Sbjct: 311 WGSASFPRYSHISVVAHSLGGLV 333


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 187 HHGNNLNTNASQEW 146
           HHGN  N+ ++Q W
Sbjct: 622 HHGNTYNSGSAQSW 635


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,738,105
Number of Sequences: 5004
Number of extensions: 26340
Number of successful extensions: 39
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)