Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J18
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1509 - 34074206-34074398,34074506-34074777,34075411-340756...    28   5.8  

>04_04_1509 - 34074206-34074398,34074506-34074777,34075411-34075608,
            34076092-34076187,34076318-34076500,34076597-34076799,
            34076887-34077013,34077098-34077292,34077400-34077540,
            34077669-34077812,34077876-34078040,34078776-34078976,
            34079049-34079195,34079275-34079427,34079731-34079833,
            34079954-34080069,34080168-34080349,34080442-34080541,
            34081200-34081527,34081605-34081834,34081979-34082110,
            34082787-34082859,34083274-34083338
          Length = 1248

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 24   SRVKCIYNVSIRHVLVHEFMSIYYALAGW 110
            SRV+CI N + +HV   E M +   +A W
Sbjct: 1188 SRVRCIVNDTSKHVAPKEIMRLKKLIAYW 1216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,679,453
Number of Sequences: 37544
Number of extensions: 254455
Number of successful extensions: 481
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)