Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J18
         (554 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    27   0.13 
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   1.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   6.3  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   8.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.4  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +2

Query: 14  TWLLKSKMYL*CEYSPRACP 73
           T LLK K YL CEY P   P
Sbjct: 42  TTLLKLKRYLFCEYDPNVRP 61


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 392 IYLLYRKYFIPNNI 433
           IYL Y K  +PNNI
Sbjct: 45  IYLTYAKNILPNNI 58


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 389 MIYLLYRKYFIPNNIY 436
           ++Y++    FIP NIY
Sbjct: 407 LVYIIMLIIFIPRNIY 422


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 167 IHYSLVYTSVAPAHVPF 217
           +HY++ Y    P  VPF
Sbjct: 334 LHYNINYIEQIPVPVPF 350


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 286 ENPYLLQACRKG 321
           E PY+ +AC KG
Sbjct: 201 EKPYVCKACGKG 212


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 314 VKELRSNILVAFILYKRSPLCPPWIMIYLL 403
           ++EL +    A  LY+R     PWI++ L+
Sbjct: 43  MRELNATACAA--LYERVEWSGPWILVTLI 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,238
Number of Sequences: 438
Number of extensions: 3461
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)