Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J16
         (430 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82073-3|CAB04926.1|  631|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z83233-12|CAB05769.2|  486|Caenorhabditis elegans Hypothetical p...    27   4.3  
AL132859-3|CAB60491.1|  346|Caenorhabditis elegans Hypothetical ...    27   4.3  
AL021175-10|CAA15972.2|  486|Caenorhabditis elegans Hypothetical...    27   4.3  

>Z82073-3|CAB04926.1|  631|Caenorhabditis elegans Hypothetical
           protein W06D12.5 protein.
          Length = 631

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 212 VFVYKIYIKILKQSGEYVKSCYYK 283
           V++ + YI+++K  G+Y  S YYK
Sbjct: 282 VYIREAYIELMKLEGQYKGSTYYK 305


>Z83233-12|CAB05769.2|  486|Caenorhabditis elegans Hypothetical
           protein K06B4.12 protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 212 VFVYKIYIKILKQSGEYVKSCYYK 283
           V++ + Y+ ++K  G+Y  S YYK
Sbjct: 160 VYIREAYVSLMKLEGQYKGSTYYK 183


>AL132859-3|CAB60491.1|  346|Caenorhabditis elegans Hypothetical
           protein Y39C12A.6 protein.
          Length = 346

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 295 FLIVF-IVT*LNIFSALFKNFNINFVNEYKY 206
           FLIVF I+  LNIFS ++  FN+      KY
Sbjct: 21  FLIVFLIIIILNIFSLMYYFFNLAITVRVKY 51


>AL021175-10|CAA15972.2|  486|Caenorhabditis elegans Hypothetical
           protein K06B4.12 protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 212 VFVYKIYIKILKQSGEYVKSCYYK 283
           V++ + Y+ ++K  G+Y  S YYK
Sbjct: 160 VYIREAYVSLMKLEGQYKGSTYYK 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,661,865
Number of Sequences: 27780
Number of extensions: 142605
Number of successful extensions: 269
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)