Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J15
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...   107   9e-25
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac...    26   3.5  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    26   4.6  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score =  107 bits (258), Expect = 9e-25
 Identities = 49/109 (44%), Positives = 74/109 (67%), Gaps = 2/109 (1%)
 Frame = +1

Query: 253 KESKDPFDSMPKGSFNMDDFKRFYSNEE-EAKSIPYFWEKFDPEHYSIWYCQYKYPEELA 429
           K  K P  S P GSF+++++KR YSN++  + ++P+F+E FDPE+YS+W   Y YPE+L 
Sbjct: 249 KPPKHPLASAPNGSFDIEEYKRVYSNQDTRSGALPWFFEHFDPENYSVWKVDYSYPEDLK 308

Query: 430 K-VFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSTISGVWVWRVHE 573
           + VFM+ NLI G FQRL+  RK  F    + G + D+TI+G +V + H+
Sbjct: 309 QPVFMTNNLIGGFFQRLEASRKYIFGCCVVIGENGDNTITGAFVIKGHD 357


>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
           Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -1

Query: 554 HTPEMVESLSP---PKRQTEAKACLRILSRRWNMPVIRL 447
           H P  V+ L+    P    E   CL IL + WN PV+ L
Sbjct: 82  HDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWN-PVLNL 119


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 263 KTRLTRCQRGLSIWMTSSVSILTKRRRNRFLTSG 364
           K  +   +RG+SI    +VS +   RRNR L  G
Sbjct: 150 KLTVVNAERGISIHKDKNVSDIFIMRRNRLLCCG 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,151
Number of Sequences: 5004
Number of extensions: 35295
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)