Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J15
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671...    92   3e-19
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899...    78   6e-15
02_01_0567 - 4168164-4168250,4168672-4168828,4168951-4169090,417...    28   6.2  
06_03_1310 + 29238644-29240260                                         27   8.2  
01_05_0490 + 22672241-22674679                                         27   8.2  

>02_02_0095 +
           6716327-6716335,6717302-6717451,6717523-6717583,
           6717646-6717725,6717802-6717903,6717982-6718471,
           6718796-6719171,6720320-6720379,6720887-6721056,
           6721287-6721340,6721384-6721523,6722362-6722511,
           6722582-6722642,6722705-6722784,6722933-6723034,
           6723111-6723612,6724401-6724776,6725419-6725493,
           6726058-6726198,6726264-6726282
          Length = 1065

 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
 Frame = +1

Query: 262 KDPFDSMPKGSFNMDDFKRFYSNEE---EAKSIPYFWEKFDPEHYSIWYCQYKYPEELAK 432
           K+P D +P     +D++KR YSN +      +I  FW+ +DPE YS+W+C YKY +E   
Sbjct: 264 KNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTV 323

Query: 433 VFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSTISGVWVWRVHEL 576
            F++ N + G  QR+D  RK AF  + + G +    + G+W++R  E+
Sbjct: 324 SFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEI 371



 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
 Frame = +1

Query: 262  KDPFDSMPKGSFNMDDFKRFYSNEE---EAKSIPYFWEKFDPEHYSIWYCQYKYPEELAK 432
            K+P D +P     +D++KR YSN +      +I  FW+ +DPE YS+W+C YKY +E   
Sbjct: 829  KNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTV 888

Query: 433  VFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSTISGVWVWRVHEL 576
             F++ N + G  QR+D  RK AF  + + G +    + G+W++R  E+
Sbjct: 889  SFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEI 936


>06_03_0529 -
           21788132-21788395,21788414-21788511,21789458-21789953,
           21790033-21790134,21790218-21790270,21790354-21790414,
           21790491-21790640,21791298-21791350,21794125-21794152
          Length = 434

 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
 Frame = +1

Query: 262 KDPFDSMPKGSFNMDDFKRFYSNEE---EAKSIPYFWEKFDPEHYSIWYCQYKYPEELAK 432
           K+P D +P     +D++KR YSN +      +I  FW+ +DPE YS+W+C YKY +E   
Sbjct: 281 KNPLDLLPPSKMILDEWKRLYSNTKTNFREIAIKGFWDMYDPEGYSLWFCDYKYNDENTV 340

Query: 433 VFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSTISGVWVWRVHEL 576
            F++ N      +R+D  RK AF  + + G      + G+W++R  ++
Sbjct: 341 SFVTMN------KRMDLCRKYAFGKMLVIGSTPPFKVKGLWLFRGQDI 382


>02_01_0567 -
           4168164-4168250,4168672-4168828,4168951-4169090,
           4170318-4170456,4170562-4170830,4170914-4171000,
           4171259-4171327,4171427-4171455,4171544-4171950,
           4172906-4172977,4173150-4173221,4173299-4173370,
           4173454-4173519,4173717-4173785,4173866-4173995,
           4174846-4174975
          Length = 664

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 427 PAPPGTCTGSTRWSSARDQTSPRSKESISPPLR 329
           P+P  + + S+  S+ARD +SP S++  S  LR
Sbjct: 242 PSPSSSPSNSSGGSTARDSSSPSSRKHKSSTLR 274


>06_03_1310 + 29238644-29240260
          Length = 538

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 21/66 (31%), Positives = 26/66 (39%)
 Frame = -2

Query: 427 PAPPGTCTGSTRWSSARDQTSPRSKESISPPLR*NRNA*SHPY*KTPLASSQTGLWTPWV 248
           P PP T + S + SS    TSP S    SPP   +     HP    P  +      TP  
Sbjct: 410 PPPPPTYSESPK-SSMPPSTSPPSSHGASPPSSSSSPPTEHPGYVLPPLTPPPPTTTPPG 468

Query: 247 SHQTLP 230
            H  +P
Sbjct: 469 HHAPVP 474


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = -2

Query: 436 TLWPAPPGTCTGSTRWSSAR-----DQTSPRSKESISPPLR*NR 320
           T  P PP   T S RW+S R     DQ +   + ++ PPL  +R
Sbjct: 335 TTMPPPPPPLTRSRRWNSERLDAVLDQVARVDETAMPPPLTRSR 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,570,453
Number of Sequences: 37544
Number of extensions: 276098
Number of successful extensions: 937
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)