Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J14
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   2.7  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   4.7  
SPAC5H10.08c |pan6||pantoate-beta-alanine ligase |Schizosaccharo...    26   4.7  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   4.7  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   6.2  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   8.2  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    25   8.2  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 438 QTRGDTSRAQ*ESGADHDPYRHTASPAPGTIT 343
           +++ +T  +Q     D++P  HT  P P T T
Sbjct: 498 ESQNETDESQNTENVDYNPQTHTPVPIPTTAT 529


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 348  LFPGQGSQYVGMGRDL 395
            +F GQGSQ  GMG DL
Sbjct: 1684 VFTGQGSQEQGMGMDL 1699


>SPAC5H10.08c |pan6||pantoate-beta-alanine ligase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 366 SQYVGMGRDLLRIPTVRDLYLLAS-DVVGWDVARVCT 473
           SQ   +G DL+  PTV +LY   S D+   DV ++ T
Sbjct: 80  SQLQNLGVDLVYAPTVEELYPEGSQDITFVDVPKLST 116


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 509 LTAPCQLFGGSFRAHAGYI 453
           LT+ CQLF    +AH GY+
Sbjct: 260 LTSFCQLFSNVDKAHKGYV 278


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 375 VGMGRDLLRIPTVRDLYLLASD 440
           V MG  L RIP +R+LY L  D
Sbjct: 416 VAMGLPLSRIPHIRELYGLPRD 437


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 1   ARGKKIFIYCLKKLIPIKLCDGEHVERKLVKIT*RLWLDM 120
           ARG K+F  CL+ +   K    EHV   L +I    W+DM
Sbjct: 194 ARGIKLFRSCLELIEIYKETKAEHVRVFLEQIL-PPWMDM 232


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 477 LPCTRGLHPTRLRQTRGDTSRAQ*ESGADHDP 382
           L  ++G+HPTR+  TR  +S  +  S ++ DP
Sbjct: 516 LSFSKGIHPTRILFTRKSSSILRMISHSNTDP 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,160,879
Number of Sequences: 5004
Number of extensions: 40436
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)