Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_J14
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0271 + 27342468-27343577 29 2.7
01_01_1034 + 8181373-8181484,8182810-8183384,8185410-8185468,818... 29 2.7
04_03_0297 + 14060687-14060787,14061341-14061473,14061566-140617... 29 3.6
07_03_1668 - 28487357-28487838,28487933-28488101 28 4.8
01_05_0632 - 23836964-23837068,23837241-23837369,23838882-238389... 28 4.8
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389... 28 4.8
06_03_1468 - 30354724-30354945,30359326-30359497,30359587-303597... 28 6.3
11_06_0734 - 26774471-26774652,26775008-26775137,26775447-267755... 27 8.4
11_01_0437 - 3347960-3349246 27 8.4
05_05_0313 - 24026142-24026708 27 8.4
04_03_0029 - 9714031-9714072,9714196-9714219,9714343-9714406,971... 27 8.4
03_05_0939 - 28983091-28983747,28983805-28983913,28984245-289848... 27 8.4
01_06_0101 + 26443080-26443172,26444063-26445139,26445226-26445804 27 8.4
>02_05_0271 + 27342468-27343577
Length = 369
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -3
Query: 587 ANSLDRTGSFLSHTFQRRQRGHQHGGLTAPCQLFGGS 477
A SL + GS L+ T Q H H G + FGGS
Sbjct: 2 ALSLSQVGSHLASTLQDHGHHHHHHGASPDLLRFGGS 38
>01_01_1034 +
8181373-8181484,8182810-8183384,8185410-8185468,
8185785-8185878
Length = 279
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 482 GSFRAHAGYIPPDYVRREEIQVAHSRNPEQITTHTDILRALPR 354
G +R+H Y+ +R +EI VA +R P T + LPR
Sbjct: 16 GQWRSHEFYVGSPRLRSQEIFVAVARRPVLAVVATGGISGLPR 58
>04_03_0297 +
14060687-14060787,14061341-14061473,14061566-14061720,
14061850-14062042,14062130-14062248,14062332-14062548,
14062670-14062765,14062908-14063084,14063175-14063291,
14063398-14063564,14063680-14063904,14064052-14064373,
14064624-14064868,14065227-14065290,14065414-14065437,
14065561-14065602
Length = 798
Score = 28.7 bits (61), Expect = 3.6
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -3
Query: 326 LDSVAASGLPVGTPRIRLSRPLQLLVLRRFWG-SGERARVI*XCRSG-LRFPPP 171
L V SGLP TP ++ + Q L R WG + ER + C S L+ P P
Sbjct: 214 LAEVFVSGLPKYTPYLKFEQRFQEWGLERGWGDTAERCKETLNCLSEVLQAPDP 267
>07_03_1668 - 28487357-28487838,28487933-28488101
Length = 216
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -3
Query: 527 GHQHGGLTAPCQLFGGSFRAHAGYIPPDYV 438
GH HGG PC+ F AG+ YV
Sbjct: 140 GHSHGGAAIPCREFMDYDAVMAGFFHQPYV 169
>01_05_0632 -
23836964-23837068,23837241-23837369,23838882-23838966,
23839429-23839658
Length = 182
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +1
Query: 7 GKKIFIYCLKKLIPIKLCDGEHVERKLVKIT*RLWLDMNLRMPTRLVAVTRLCHTGGGKR 186
GKK+ + CL++++ + C GE + D+NL P R + V C+ G +
Sbjct: 75 GKKLRVSCLRRILAVSACSGE-ADSDAGSAPAESTFDLNL--PRRSLLVQFTCNACGERT 131
Query: 187 SPL 195
L
Sbjct: 132 KRL 134
>01_05_0329 -
21037980-21038378,21038517-21038737,21038827-21038905,
21039002-21039071,21039144-21039255,21039359-21039398,
21039482-21039676,21039925-21040044,21040684-21041106,
21042386-21042928
Length = 733
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 428 EIQVAHSRNPEQITTHTDILRALPREQ*HCSI 333
E+ V H + P+ + +T+ + P+EQ HC++
Sbjct: 490 EVPVRHKKAPDALEMNTNSVVFSPKEQTHCNL 521
>06_03_1468 -
30354724-30354945,30359326-30359497,30359587-30359770,
30359865-30360111,30360817-30362052
Length = 686
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3
Query: 434 REEIQVAHSRNPEQITTHTDILRAL 360
RE ++ A+SR + ITTH DIL L
Sbjct: 633 RELVEKAYSRATQIITTHIDILHKL 657
>11_06_0734 -
26774471-26774652,26775008-26775137,26775447-26775596,
26775685-26775918,26775990-26776161,26776285-26776506,
26776604-26776770,26776880-26777018,26777342-26777693,
26778175-26778370
Length = 647
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 444 VGWDVARVCTEGPTEELARRCQTAVLVTSLAALERVRE 557
+G D AR+ E PTEEL A L ++RVRE
Sbjct: 210 MGVDWARLMPEEPTEELKSSVNFAALERYRWIIQRVRE 247
>11_01_0437 - 3347960-3349246
Length = 428
Score = 27.5 bits (58), Expect = 8.4
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Frame = +1
Query: 124 LRMPTRLVAVTRLCHTGGGKRSPLRXY*MTRARSPEPQKRLSTSSCSGRLSR--IRGVPT 297
LR VA++ +GGG P + SP+P RL+ + LS + +P
Sbjct: 68 LRSSAAYVALSAALRSGGGADDPACHWLYDTLLSPDPDLRLAALAFLPLLSSLYLLRLPP 127
Query: 298 GKPLAATESSRAILQCYCSRGRAR 369
P + + +L Y S + R
Sbjct: 128 ALPSSLSGFEAVLLAVYSSEAKNR 151
>05_05_0313 - 24026142-24026708
Length = 188
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 437 RREEIQVAHSRNPEQITTHTDILRALPRE 351
+R EI+V + NP ++TT + RAL +E
Sbjct: 44 KRREIKVVYIANPMRVTTSEEGFRALVQE 72
>04_03_0029 -
9714031-9714072,9714196-9714219,9714343-9714406,
9714763-9715007,9715258-9715579,9715727-9715951,
9716067-9716233,9716340-9716456,9716547-9716723,
9716866-9716961,9717083-9717299,9717385-9717503,
9717591-9717783,9717913-9718067,9718160-9718292,
9718846-9718946
Length = 798
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -3
Query: 326 LDSVAASGLPVGTPRIRLSRPLQLLVLRRFWG-SGERARVI*XCRSG-LRFPPP 171
L V SGLP TP ++ + Q L + WG + ER + C S L+ P P
Sbjct: 214 LAEVFVSGLPKYTPYLKFEQRFQEWGLEKGWGDTAERCKETLNCLSEVLQAPDP 267
>03_05_0939 -
28983091-28983747,28983805-28983913,28984245-28984801,
28985197-28985414,28985508-28985613,28986352-28986429
Length = 574
Score = 27.5 bits (58), Expect = 8.4
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = -3
Query: 563 SFLSHTFQRRQRGHQHGGLTAPCQLFGGSFRAHAGYIPPDYVRREEI-QVAHSRNPEQIT 387
SF S T R + +T CQ+ SFR ++P D R E+ A + +
Sbjct: 254 SFFSGTSLYRFQKPGGSPITRVCQVVVASFRKWNVHVPEDSSRLYELPDGASAIEGSRQL 313
Query: 386 THTDILRALPR 354
HTD LR L +
Sbjct: 314 EHTDELRCLDK 324
>01_06_0101 + 26443080-26443172,26444063-26445139,26445226-26445804
Length = 582
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 263 LQLLVLRRFWGSGERARVI*XCRSGLRFPPPV 168
LQ++ R W ERA V+ +G R+PP +
Sbjct: 548 LQIVPRHREWHECERAEVLDDLTTGFRWPPQI 579
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,769,818
Number of Sequences: 37544
Number of extensions: 345548
Number of successful extensions: 980
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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