Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_J14
(589 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF040642-2|AAN73874.2| 411|Caenorhabditis elegans Hypothetical ... 78 5e-15
Z83115-7|CAJ85758.1| 318|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z83115-6|CAB05558.1| 384|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81137-12|CAJ85772.1| 318|Caenorhabditis elegans Hypothetical p... 29 3.2
Z81137-11|CAB03472.1| 384|Caenorhabditis elegans Hypothetical p... 29 3.2
AC024776-19|AAK68480.2| 398|Caenorhabditis elegans Hypothetical... 28 5.7
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 27 9.9
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 27 9.9
>AF040642-2|AAN73874.2| 411|Caenorhabditis elegans Hypothetical
protein C50D2.9 protein.
Length = 411
Score = 77.8 bits (183), Expect = 5e-15
Identities = 35/83 (42%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Frame = +3
Query: 342 VLLFPGQGSQYVGMGRDLLRIPTVRDLYLLASDVVGWDVARVCTEGPTEELARR--CQTA 515
VLLFPGQG+Q+VGMG+ ++ IP R ++ AS+V+G+D+ +VC +GP ++L + CQ A
Sbjct: 95 VLLFPGQGAQFVGMGQKVMDIPAARRVFDEASEVLGYDMLKVCQDGPKQKLEQTLYCQPA 154
Query: 516 VLVTSLAALERVREERPGAIERV 584
++ +S+AA E ++ P E +
Sbjct: 155 IVTSSIAAFEALKASDPSIEENL 177
>Z83115-7|CAJ85758.1| 318|Caenorhabditis elegans Hypothetical
protein K11D2.4b protein.
Length = 318
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 118 MNLRMPTRLVAVTRLCHTGGGKRSPLRXY*MTRARSPEPQKRLSTSSCSG 267
MN+ P L A+ R GG +R +T+A +P P + S S+ G
Sbjct: 28 MNMMQPIHLAAIGRHSSQGGSERHLSTESSVTQAPAPVPTTKRSRSTHDG 77
>Z83115-6|CAB05558.1| 384|Caenorhabditis elegans Hypothetical
protein K11D2.4a protein.
Length = 384
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 118 MNLRMPTRLVAVTRLCHTGGGKRSPLRXY*MTRARSPEPQKRLSTSSCSG 267
MN+ P L A+ R GG +R +T+A +P P + S S+ G
Sbjct: 94 MNMMQPIHLAAIGRHSSQGGSERHLSTESSVTQAPAPVPTTKRSRSTHDG 143
>Z81137-12|CAJ85772.1| 318|Caenorhabditis elegans Hypothetical
protein K11D2.4b protein.
Length = 318
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 118 MNLRMPTRLVAVTRLCHTGGGKRSPLRXY*MTRARSPEPQKRLSTSSCSG 267
MN+ P L A+ R GG +R +T+A +P P + S S+ G
Sbjct: 28 MNMMQPIHLAAIGRHSSQGGSERHLSTESSVTQAPAPVPTTKRSRSTHDG 77
>Z81137-11|CAB03472.1| 384|Caenorhabditis elegans Hypothetical
protein K11D2.4a protein.
Length = 384
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 118 MNLRMPTRLVAVTRLCHTGGGKRSPLRXY*MTRARSPEPQKRLSTSSCSG 267
MN+ P L A+ R GG +R +T+A +P P + S S+ G
Sbjct: 94 MNMMQPIHLAAIGRHSSQGGSERHLSTESSVTQAPAPVPTTKRSRSTHDG 143
>AC024776-19|AAK68480.2| 398|Caenorhabditis elegans Hypothetical
protein Y41D4B.6 protein.
Length = 398
Score = 27.9 bits (59), Expect = 5.7
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +3
Query: 327 PRDTTVLLFPGQGSQYVGMGRDLLRIPTVRDLYLLASDVVGWDVARVCTEGPTEELARRC 506
P DTTV L G GS Y+ + L+ T R+L +++G + + V T EEL +
Sbjct: 33 PLDTTVSLSRGNGSAYLKL-PIALKANTTRELGRFPIEMLG-NYSLVITGDKVEELGIKS 90
Query: 507 QT 512
T
Sbjct: 91 ST 92
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 342 VLLFPGQGSQYVGMGRDLL 398
VL+ GQGSQY MGR L+
Sbjct: 3724 VLMLTGQGSQYPMMGRQLV 3742
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical
protein F32H2.5 protein.
Length = 2586
Score = 27.1 bits (57), Expect = 9.9
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Frame = +3
Query: 348 LFPGQGSQYVGMGRDLLRIPTVRDLYLLASDVV---GWDV-ARVCTEGPTE--ELARRCQ 509
++ G GSQ+ GM L++IP D +S + G DV +C P + C
Sbjct: 507 IYSGMGSQWPGMAIKLMKIPMFDDSLRASSKTLEEFGLDVYGMLCNPDPEQYSNNTMNCM 566
Query: 510 TAVLVTSLA 536
A+ +A
Sbjct: 567 LAITAIQIA 575
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 329 RLDSVAASGLPVGTPRIRLSRPLQLLVLRRFWGS 228
R + + G P+ PR + PLQ LV WG+
Sbjct: 605 RFNRILLKGTPLNDPRAIVLDPLQALVFWTDWGA 638
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,516,909
Number of Sequences: 27780
Number of extensions: 252889
Number of successful extensions: 624
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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