Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J13
         (478 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|ch...    26   3.4  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    26   3.4  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    25   5.9  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   5.9  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   5.9  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   7.9  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    25   7.9  

>SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 333

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 254 NGFRSGPFRLDKLGLGWHACKRWRKQSY 171
           NGF+ GP  L  +GL W   +   KQ++
Sbjct: 5   NGFKVGPIGLGLMGLTWRPKQTPIKQAF 32


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -3

Query: 155 QKSVWKECMVWSRDTDSARGPSMLGVTPA 69
           Q  +W+   ++  D + A+GP+++G++PA
Sbjct: 548 QTDIWQ---LYCSDMERAQGPNVMGISPA 573


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 202 CHPRPNLSKRKGPDLKPFSEPCGPSC 279
           CH  P+ + +   DLK F   CG +C
Sbjct: 45  CHGNPSDTSKLPLDLKLFRWDCGSNC 70


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 34  FGRGRQRPERPPAGVTPNIDGPLAES 111
           +GRGRQ  +RPP+ +T      L E+
Sbjct: 353 YGRGRQPDQRPPSILTSLNSSSLKEN 378


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 106  ESVSRDQTMHSFHTLFCRRCFKYDCFLHRLQACH 207
            + V+  +T+  FH      C   DCF + +  CH
Sbjct: 1082 KDVTSFRTLDDFHVT--ANCHSIDCFKYSIALCH 1113


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 364 HRVTLAIVFLPCTPFLGLI 308
           +R  L    LPC PFLG+I
Sbjct: 886 YRALLRKAELPCVPFLGVI 904


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 108 LRQGPVDVGRHSGGRAFGSLP 46
           LRQ  +DV R + GRA G  P
Sbjct: 412 LRQRKIDVARKTLGRALGMCP 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,573,778
Number of Sequences: 5004
Number of extensions: 29562
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)