Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_J13
(478 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 48 5e-06
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 40 0.001
07_03_1733 + 29117547-29118203 30 1.1
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 29 1.9
03_05_0164 - 21432289-21432355,21433612-21433699,21433859-214339... 29 2.6
07_03_1554 + 27659995-27660093,27661084-27661120,27661204-276612... 28 3.4
07_03_1107 - 24024387-24024497,24025799-24026410 28 3.4
03_02_0823 - 11538677-11539324 28 3.4
11_01_0441 - 3363069-3363137,3363273-3363430,3363549-3363613,336... 28 4.5
05_07_0035 - 27221338-27221433,27221510-27221599,27222056-272221... 28 4.5
01_05_0511 - 22831889-22832523,22833743-22833835,22834018-228342... 28 4.5
01_06_0243 + 27833497-27834042,27834144-27834238,27834400-27835567 27 5.9
12_02_0855 + 23703827-23704019,23704465-23704481,23705051-237052... 27 7.8
04_04_1582 - 34590698-34591199,34593849-34594690 27 7.8
02_05_0814 - 31970558-31971126,31971242-31971413 27 7.8
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 47.6 bits (108), Expect = 5e-06
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +1
Query: 121 DQTMHSFHTLFCRRCFKYDCFLHRLQACHPRPNLSKRKGPDLKPFSEPCGPSCYM 285
D + SF LFCRRC +DC LH P+ + G +L PCG CY+
Sbjct: 83 DVALDSFDNLFCRRCLVFDCRLHGCSQNLVFPSEKQPYGHELDENKRPCGDQCYL 137
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +1
Query: 121 DQTMHSFHTLFCRRCFKYDCFLHRLQACHPRPNLSKRKGPDLKPFSE--PCGPSCYMLL 291
D + SF LFCRRC +DC LH C K L E PCG CY L+
Sbjct: 267 DAALDSFDNLFCRRCLVFDCKLH---GCSQDLVFPTEKQAPLCSSDEGTPCGIHCYKLV 322
>07_03_1733 + 29117547-29118203
Length = 218
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 86 LGVTPAGGRSGRCRPRPKSRSP 21
LG+ PAGGR+G+ R R R+P
Sbjct: 101 LGLGPAGGRAGKRRSRASKRAP 122
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 8 TSGSPGCGISDEGGSDPNALPPE*RPTSTGPWRSPCPATRP 130
TS P + S+PNA P + PTS P P P+ P
Sbjct: 31 TSPLPLAPAAAASSSNPNATPADTTPTSPPPASPPLPSATP 71
>03_05_0164 -
21432289-21432355,21433612-21433699,21433859-21433954,
21434284-21434563
Length = 176
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 62 ALPPE*RPTSTG-PWRSPCPATRPCT 136
ALPP P++T P R P PA PCT
Sbjct: 25 ALPPPLSPSTTRIPQRRPSPAPLPCT 50
>07_03_1554 +
27659995-27660093,27661084-27661120,27661204-27661280,
27662272-27662342,27662512-27662590,27662726-27662828,
27662963-27663082,27663180-27663257,27663416-27663471,
27663588-27663657,27664179-27664266,27664503-27664800,
27664943-27665158,27665521-27665841,27666054-27666103,
27666493-27666553,27666633-27666716,27666926-27667039,
27667134-27667300,27667559-27667628,27668328-27668507,
27668619-27668807
Length = 875
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -3
Query: 278 QLGPQGSENG---FRSGPFRLDKLGLGWHACKRWRKQSYLKQR 159
Q G S +G F+SGP + G+GW K W+K+ ++ R
Sbjct: 22 QRGGAASASGNAVFKSGPLFISSKGIGW---KSWKKRWFILTR 61
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 49 QRPERPPAGVTPNIDGPLAESVSRDQTMHSFHTLFCRRCFKY-DC 180
++ + P A T + GP + V+ D T +F RC Y DC
Sbjct: 178 KKAKAPAASSTADAPGPAGDGVAADSTACPICDVFSSRCAAYLDC 222
>03_02_0823 - 11538677-11539324
Length = 215
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 68 GGRSGRCRPRPKSRSP 21
GGR+G+ RPRP R+P
Sbjct: 96 GGRAGKRRPRPSKRAP 111
>11_01_0441 -
3363069-3363137,3363273-3363430,3363549-3363613,
3363709-3363777,3363881-3363973,3364081-3364184,
3364327-3364410,3364486-3364693,3364809-3364880,
3365005-3365080,3365788-3365900,3366006-3366153,
3366996-3367073,3367968-3368097,3368296-3368486,
3368644-3368704,3368847-3368956,3369090-3369312
Length = 683
Score = 27.9 bits (59), Expect = 4.5
Identities = 21/73 (28%), Positives = 30/73 (41%)
Frame = -2
Query: 270 TTGFREWL*VRSLPLGQVRSRVARLQTXXXXXXXXXXXXXXXXEGVHGLVAGHGLRQGPV 91
TTG WL R P Q + VA+L+ G G+ HG + P
Sbjct: 263 TTGGTRWL-QRMRPCVQDAAVVAQLRACGAVLAGKTNMHELGA-GTSGINPHHGSTRNPY 320
Query: 90 DVGRHSGGRAFGS 52
+ G+ +GG + GS
Sbjct: 321 NTGKVAGGSSGGS 333
>05_07_0035 -
27221338-27221433,27221510-27221599,27222056-27222115,
27222231-27222523,27222601-27222757,27222917-27223261,
27223890-27224020,27224119-27224596,27224817-27225563
Length = 798
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/44 (31%), Positives = 15/44 (34%)
Frame = +2
Query: 8 TSGSPGCGISDEGGSDPNALPPE*RPTSTGPWRSPCPATRPCTP 139
+S S S S N PP PT PW T P P
Sbjct: 35 SSSSTTAAASSSSSSGGNRAPPAPNPTRGAPWLQKWGPTDPAAP 78
>01_05_0511 -
22831889-22832523,22833743-22833835,22834018-22834215,
22834365-22834494,22834596-22834714,22835244-22835487,
22835607-22835807
Length = 539
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 71 PE*RPTSTGPWRSPCPATRPCTP 139
P RP S P R+P P+ P TP
Sbjct: 515 PRRRPRSPSPARAPIPSVAPATP 537
>01_06_0243 + 27833497-27834042,27834144-27834238,27834400-27835567
Length = 602
Score = 27.5 bits (58), Expect = 5.9
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 56 GRCRPRPKSRSPG 18
GRCRP P+S+ PG
Sbjct: 148 GRCRPDPRSKQPG 160
>12_02_0855 +
23703827-23704019,23704465-23704481,23705051-23705254,
23705486-23705605,23705867-23706472
Length = 379
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 25 LRDFGRGRQRPERPPAGVTPNIDG 96
+ D GRG++RP P TP+ DG
Sbjct: 15 MADPGRGKKRPPSPSTPPTPSDDG 38
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 27.1 bits (57), Expect = 7.8
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = -3
Query: 203 HACKRW-RKQSYLKQRRQKSVWKECMVWSRDTDSARGP---SMLGVTPAGGRSGRCRPRP 36
HA K + R S ++RR+ S+ V + DT +A+GP G + G+S + +P
Sbjct: 314 HAQKYFIRLNSMNRERRRSSIHDITSVNNGDTSAAQGPITGQPNGPSANPGKSSKQSLQP 373
Query: 35 KSRSPGI 15
+ PG+
Sbjct: 374 ANAPPGV 380
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 27.1 bits (57), Expect = 7.8
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 2 SRTSGSPGCGISDEGGSDPNALPPE*RPTSTGPWRSPCPAT-RPCTP 139
S +S S G G GGS P++ P PT+ P +P P T P TP
Sbjct: 126 SSSSSSGGGGGGGGGGSTPSS-PSSPTPTTPNP-STPTPTTPYPSTP 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,428,889
Number of Sequences: 37544
Number of extensions: 276454
Number of successful extensions: 1191
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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