Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J13
         (478 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical pr...    31   0.43 
Z77662-15|CAI79240.1|  255|Caenorhabditis elegans Hypothetical p...    30   0.99 
Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p...    29   1.7  
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.      29   1.7  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U12966-6|AAM48533.1|  783|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z37983-2|CAA86055.1|  585|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical
           protein R102.6 protein.
          Length = 324

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = +2

Query: 14  GSPGCGISDEG-GSDPNALPPE*RPTSTGPWRSPCPATRPCTP 139
           G  GCG S  G     + LPP   P    P   PCP   PC P
Sbjct: 224 GGCGCGSSCGGCNMGCSCLPPPPSPVCMPPPPPPCPMPIPCPP 266


>Z77662-15|CAI79240.1|  255|Caenorhabditis elegans Hypothetical
           protein F47B8.14 protein.
          Length = 255

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +2

Query: 8   TSGSPGCGISDEGGSDPNALPPE*RPTSTGPWRSPCPATRP 130
           +SG  G G S  GG   +A PP   P    P  +P PA  P
Sbjct: 21  SSGGGGGGYSGGGGGGGDAAPPPPPPADAAP--APAPAPEP 59


>Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical
           protein F47B8.5 protein.
          Length = 579

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = +2

Query: 8   TSGSPGCGISDEGGSDPNALPPE*RPTSTGPWRSPCPATRP 130
           +SG  G G S  GG    A PP   P    P   P P   P
Sbjct: 387 SSGGGGGGYSGGGGGGGEAAPPSSPPADAAPAPPPAPEPVP 427


>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
           protein C47D12.1c protein.
          Length = 4053

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +2

Query: 35  SDEGGSDPNALPPE*RPTSTGPWRSP 112
           +DE G DPN LPP   PT  G   SP
Sbjct: 541 ADESGGDPNKLPP---PTKEGKKTSP 563


>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical
           protein C47D12.1b protein.
          Length = 4061

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +2

Query: 35  SDEGGSDPNALPPE*RPTSTGPWRSP 112
           +DE G DPN LPP   PT  G   SP
Sbjct: 541 ADESGGDPNKLPP---PTKEGKKTSP 563


>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical
           protein C47D12.1a protein.
          Length = 4064

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +2

Query: 35  SDEGGSDPNALPPE*RPTSTGPWRSP 112
           +DE G DPN LPP   PT  G   SP
Sbjct: 541 ADESGGDPNKLPP---PTKEGKKTSP 563


>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
          Length = 4064

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +2

Query: 35  SDEGGSDPNALPPE*RPTSTGPWRSP 112
           +DE G DPN LPP   PT  G   SP
Sbjct: 541 ADESGGDPNKLPP---PTKEGKKTSP 563


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 17/35 (48%), Positives = 17/35 (48%)
 Frame = +2

Query: 35  SDEGGSDPNALPPE*RPTSTGPWRSPCPATRPCTP 139
           S  GGS P   PP  R   T P RSP P   P TP
Sbjct: 131 SRAGGSSPPPPPPP-RVPRTPPPRSPPPRRPPMTP 164


>U12966-6|AAM48533.1|  783|Caenorhabditis elegans Hypothetical
           protein F54D8.6 protein.
          Length = 783

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 16  IPGL-RDFGRGRQRPERPPAGVTPNIDGP 99
           IPG+ R  G GR+  +RPP    P ID P
Sbjct: 590 IPGVDRPPGGGRRGVDRPPGSGMPGIDRP 618


>Z37983-2|CAA86055.1|  585|Caenorhabditis elegans Hypothetical
           protein B0393.2 protein.
          Length = 585

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = +1

Query: 49  QRPERPPAGVTPNIDGPLAESVS 117
           QRP+RPPA V    DG  AES S
Sbjct: 405 QRPQRPPAAVNSKNDG--AESPS 425


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,220,710
Number of Sequences: 27780
Number of extensions: 194056
Number of successful extensions: 718
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)