Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J12
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.1  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    26   4.1  
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce...    25   7.1  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   7.1  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    25   9.4  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   9.4  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = -3

Query: 366 GDSLN*ALFLYIEE*MEVIITQARYNAYDDKFTIVKNFRRIF 241
           G SLN  LFL I     ++ T  R N    +FT   NF R F
Sbjct: 682 GKSLNSHLFLQIPNINFIVSTILRDNTAISRFTTEINFLRCF 723


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 276 KFTIVKNFRRIFTFVVLLIRPPLSFVLTLV 187
           K  I  +F    T VVLL+ PP S +L LV
Sbjct: 81  KKIISYHFISFHTIVVLLLLPPFSHLLVLV 110


>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 155 NEMRS*SVHSGTNVKTNDSGGRISKTTKVKILRK--FLTIV 271
           N +R+  + S  N + N SGGR ++  KVK L K  FL ++
Sbjct: 163 NAVRTAQLQSSLN-RENISGGRTAREQKVKELSKASFLDLI 202


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 268 RELVIISIITCLCDYNFHLFFY 333
           RE   + I+ CLC     LFFY
Sbjct: 367 REKYYLQIVDCLCTQKDPLFFY 388


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
          Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 87 CMNALLFGSLFFVLRP 40
          C+   LFGSL  +LRP
Sbjct: 17 CLRLFLFGSLILLLRP 32


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 51  QRKGCQIRGHSYKVGEVVRASSGPCLHCTC 140
           +R G ++ GH ++ GEV+       L  TC
Sbjct: 91  KRSGSKVCGHVFRAGEVIYRCKNCGLDNTC 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,289,429
Number of Sequences: 5004
Number of extensions: 46047
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)