Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J12
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0014 - 19267601-19267831,19268338-19268454,19268733-192688...    29   2.4  
10_01_0180 - 2037656-2037858,2038517-2038579,2038909-2039782           29   3.1  
08_01_0491 + 4290881-4291228,4291298-4291393                           27   7.2  
06_01_0745 + 5570821-5571496,5572205-5572322,5572410-5572571,557...    27   7.2  
10_08_0041 - 14374684-14377339,14377371-14378233                       27   9.5  

>11_06_0014 -
           19267601-19267831,19268338-19268454,19268733-19268890,
           19269501-19269612,19269721-19269908,19270344-19270436,
           19270521-19270708,19271635-19271720,19272662-19272811,
           19273930-19274065,19274143-19274222,19275546-19275626,
           19276114-19276245,19276490-19276610,19277457-19277518,
           19277846-19277974,19278514-19278573,19278689-19278772,
           19278852-19279532
          Length = 962

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 256 LSKDFHLRRFADTAAAIICLNIGSGVHALGSHFI*PSPPHVQC 128
           LS+  H+   + +AAA  C ++ S +H+ G HF    P  ++C
Sbjct: 637 LSRSSHMENVSLSAAA--CRSLSSAIHSCGQHFQILLPKVLEC 677


>10_01_0180 - 2037656-2037858,2038517-2038579,2038909-2039782
          Length = 379

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 473 LIVN-ELYACHDIL*KVSKYSIIQYYIIMTRNLDYSL 366
           L+ N +L  CH I+ ++  +  I++YII +R L Y L
Sbjct: 341 LVANWQLINCHSIVRQMISFHGIKWYIIASRTLSYLL 377


>08_01_0491 + 4290881-4291228,4291298-4291393
          Length = 147

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 99  VVRASSGPCLHCTCGGDGQMKCDPKACTPEP 191
           ++RA +G CL   CGG G    DP    P P
Sbjct: 51  LIRAFAG-CLLALCGGGGGDPSDPPPLRPRP 80


>06_01_0745 +
           5570821-5571496,5572205-5572322,5572410-5572571,
           5572650-5572681,5573406-5573584,5573697-5573897
          Length = 455

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 111 SSGPCLHCTCG-GDGQMKCDPKACT 182
           ++G C+ C+CG GD ++ C P + T
Sbjct: 250 TAGNCVQCSCGPGDLKLYCTPASLT 274


>10_08_0041 - 14374684-14377339,14377371-14378233
          Length = 1172

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +3

Query: 30  HSYKGAAQRKGCQIRGHSYKVGEVVRASSGPCLHCTCGGDGQMKCD 167
           H+  GA Q  G    G  ++   V+       LH   GG+  M CD
Sbjct: 551 HTVGGAEQDDGLHTTGAGWEQNLVLCTDVDGLLHTGAGGEQNMVCD 596


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,518,676
Number of Sequences: 37544
Number of extensions: 293067
Number of successful extensions: 620
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)