Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_J12
(533 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical pr... 31 0.52
Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical pr... 31 0.52
AF040650-3|ABE73333.1| 836|Caenorhabditis elegans Hypothetical ... 29 2.8
AF040650-2|AAT81190.1| 939|Caenorhabditis elegans Hypothetical ... 29 2.8
AF040650-1|AAB95011.1| 952|Caenorhabditis elegans Hypothetical ... 29 2.8
Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical p... 27 6.4
Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical p... 27 6.4
Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical p... 27 6.4
AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical ... 27 6.4
AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical ... 27 6.4
U61946-9|AAC24393.1| 202|Caenorhabditis elegans Hypothetical pr... 27 8.5
>Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical protein
T06D8.10 protein.
Length = 1490
Score = 31.1 bits (67), Expect = 0.52
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 51 QRKGCQIRGHSYKVGEVVRASSGPCLHCTCGGDGQMKCDP 170
+RK C++ G +G+ V + PC+ CTC +G + C+P
Sbjct: 1419 ERKTCEMNGKIIALGDSVHMT--PCVTCTCTLEG-VACNP 1455
>Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical protein
T06D8.10 protein.
Length = 1490
Score = 31.1 bits (67), Expect = 0.52
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 51 QRKGCQIRGHSYKVGEVVRASSGPCLHCTCGGDGQMKCDP 170
+RK C++ G +G+ V + PC+ CTC +G + C+P
Sbjct: 1419 ERKTCEMNGKIIALGDSVHMT--PCVTCTCTLEG-VACNP 1455
>AF040650-3|ABE73333.1| 836|Caenorhabditis elegans Hypothetical
protein T04B8.5c protein.
Length = 836
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = -3
Query: 345 LFLYIEE*MEVIITQARYNAYDDKFTIVK--NFRRIFTFVVLLIRPPLSFVLTLVPECTL 172
LF+Y+ + T +RY +D +T++ NF R+F + + S + L+ +
Sbjct: 247 LFVYVMTAFLMATTSSRYLLQND-YTVMMDTNFHRVFILIGIFSTTLFSSMSNLIGSSRV 305
Query: 171 *DRISFDRL 145
+R+S D+L
Sbjct: 306 LNRLSHDKL 314
>AF040650-2|AAT81190.1| 939|Caenorhabditis elegans Hypothetical
protein T04B8.5b protein.
Length = 939
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = -3
Query: 345 LFLYIEE*MEVIITQARYNAYDDKFTIVK--NFRRIFTFVVLLIRPPLSFVLTLVPECTL 172
LF+Y+ + T +RY +D +T++ NF R+F + + S + L+ +
Sbjct: 350 LFVYVMTAFLMATTSSRYLLQND-YTVMMDTNFHRVFILIGIFSTTLFSSMSNLIGSSRV 408
Query: 171 *DRISFDRL 145
+R+S D+L
Sbjct: 409 LNRLSHDKL 417
>AF040650-1|AAB95011.1| 952|Caenorhabditis elegans Hypothetical
protein T04B8.5a protein.
Length = 952
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = -3
Query: 345 LFLYIEE*MEVIITQARYNAYDDKFTIVK--NFRRIFTFVVLLIRPPLSFVLTLVPECTL 172
LF+Y+ + T +RY +D +T++ NF R+F + + S + L+ +
Sbjct: 363 LFVYVMTAFLMATTSSRYLLQND-YTVMMDTNFHRVFILIGIFSTTLFSSMSNLIGSSRV 421
Query: 171 *DRISFDRL 145
+R+S D+L
Sbjct: 422 LNRLSHDKL 430
>Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +3
Query: 63 CQIRGHSYKVGEVVRASSGPCLHCTCGGDGQMKCDPKAC 179
C + Y +GE + G C +C+C GQ C C
Sbjct: 738 CSYQSSVYAIGE--QWQDGRCSNCSCVTGGQTVCRQMVC 774
>Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +3
Query: 63 CQIRGHSYKVGEVVRASSGPCLHCTCGGDGQMKCDPKAC 179
C + Y +GE + G C +C+C GQ C C
Sbjct: 672 CSYQSSVYAIGE--QWQDGRCSNCSCVTGGQTVCRQMVC 708
>Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +3
Query: 63 CQIRGHSYKVGEVVRASSGPCLHCTCGGDGQMKCDPKAC 179
C + Y +GE + G C +C+C GQ C C
Sbjct: 738 CSYQSSVYAIGE--QWQDGRCSNCSCVTGGQTVCRQMVC 774
>Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +3
Query: 63 CQIRGHSYKVGEVVRASSGPCLHCTCGGDGQMKCDPKAC 179
C + Y +GE + G C +C+C GQ C C
Sbjct: 672 CSYQSSVYAIGE--QWQDGRCSNCSCVTGGQTVCRQMVC 708
>AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +3
Query: 63 CQIRGHSYKVGEVVRASSGPCLHCTCGGDGQMKCDPKAC 179
C + Y +GE + G C +C+C GQ C C
Sbjct: 672 CSYQSSVYAIGE--QWQDGRCSNCSCVTGGQTVCRQMVC 708
>AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +3
Query: 63 CQIRGHSYKVGEVVRASSGPCLHCTCGGDGQMKCDPKAC 179
C + Y +GE + G C +C+C GQ C C
Sbjct: 672 CSYQSSVYAIGE--QWQDGRCSNCSCVTGGQTVCRQMVC 708
>U61946-9|AAC24393.1| 202|Caenorhabditis elegans Hypothetical
protein F47C12.8 protein.
Length = 202
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 326 SSIYKNNAQFKLSPRSSLSFVS*LCSIG*LN-ILILFIKCRGTRTT-H*QSVINHDC 490
SS YK +F PR +S V+ C I +N +L++ TT H + H C
Sbjct: 61 SSEYKKQIKFSAHPRGDMSLVNIKCEIPNINWCAVLYVYEEDHPTTGHDVQIEKHFC 117
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,658,376
Number of Sequences: 27780
Number of extensions: 261592
Number of successful extensions: 584
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -