Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_J12
(533 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 29 0.040
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 29 0.040
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 23 2.0
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 23 2.6
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 23 2.6
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 22 4.5
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 6.0
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 7.9
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 7.9
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 28.7 bits (61), Expect = 0.040
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -3
Query: 339 LYIEE*MEVIITQARYNAYDDKFTIVKNFRRIFTFVVLLIRPPLSFVLTLVPEC 178
+++ + +EVI T +YN +D+ N R+ +V +I P S L EC
Sbjct: 12 IHMSDVIEVIETDTKYNGREDQIPREMNTERLLPYVE-IIEQPASKALRFRYEC 64
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 28.7 bits (61), Expect = 0.040
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -3
Query: 339 LYIEE*MEVIITQARYNAYDDKFTIVKNFRRIFTFVVLLIRPPLSFVLTLVPEC 178
+++ + +EVI T +YN +D+ N R+ +V +I P S L EC
Sbjct: 12 IHMSDVIEVIETDTKYNGREDQIPREMNTERLLPYVE-IIEQPASKALRFRYEC 64
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 23.0 bits (47), Expect = 2.0
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = -2
Query: 199 LNIGSGVHALGSHFI*PSPPHVQCKHGPDEARTTSPTLYECPLIWQ 62
+N+GS GS +PP + + D T + CP I++
Sbjct: 436 VNLGSACRIHGSPATTAAPPQLPTEESVDALCNTLHHWHHCPEIYK 481
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 22.6 bits (46), Expect = 2.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -1
Query: 50 CCALVGMSWEMWW 12
CC LV +SW +W
Sbjct: 252 CCMLVIVSWVSFW 264
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 22.6 bits (46), Expect = 2.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -1
Query: 50 CCALVGMSWEMWW 12
CC LV +SW +W
Sbjct: 252 CCMLVIVSWVSFW 264
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 21.8 bits (44), Expect = 4.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 96 LQLCMNALLFGSLFFVL 46
+ LC+N LL ++FF+L
Sbjct: 267 IALCINILLSQTMFFLL 283
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.4 bits (43), Expect = 6.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 240 TFVVLLIRPPLSFVLTLVPECTL 172
TFVV++ R L + L+ C L
Sbjct: 222 TFVVIIRRRTLYYFFNLIVPCVL 244
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.0 bits (42), Expect = 7.9
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -1
Query: 50 CCALVGMSWEMWWQP 6
C AL S ++ WQP
Sbjct: 1120 CAALTSQSLQVSWQP 1134
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.0 bits (42), Expect = 7.9
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -1
Query: 50 CCALVGMSWEMWWQP 6
C AL S ++ WQP
Sbjct: 1116 CAALTSQSLQVSWQP 1130
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,422
Number of Sequences: 438
Number of extensions: 3515
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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