Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J11
         (294 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    48   3e-07
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   0.57 
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    25   1.8  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    25   1.8  
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...    25   1.8  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    24   4.0  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    24   5.3  
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     24   5.3  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    23   7.1  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    23   7.1  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    23   9.3  
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma...    23   9.3  

>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 48.0 bits (109), Expect = 3e-07
 Identities = 22/79 (27%), Positives = 39/79 (49%)
 Frame = +2

Query: 11  DANLVLSKYGEYLYKNLIIFSPSVVEFGGQIDSEAITKFIDDGGHLLMAGNAAAGDVYRE 190
           D +  L +YGE LY NLI+ S      G     +++ +F+  GG+L +   +   +  RE
Sbjct: 56  DESAKLFEYGERLYDNLILLSSQSKSLGPVFSPKSLLEFVQSGGNLFVVAGSQLPEGIRE 115

Query: 191 IASECGFDMDEESAAVIDH 247
           +  +    + E  + V+DH
Sbjct: 116 LGRQLDMFLAERQSVVVDH 134


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.1 bits (57), Expect = 0.57
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 228 LQQ*LITCNYDVTDDGEHTRIV 293
           L Q   TC YDVTD+  H +++
Sbjct: 844 LSQKYSTCIYDVTDENSHLKLI 865


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +2

Query: 80  VVEFGGQIDSEAITKFIDDGGHLLMAGNAAAGDVYREIASECGFDMDEESAAVID 244
           +++FG  I+ +   KFI     LL+A      +  ++++ E G+  + ESA +ID
Sbjct: 471 LLDFGASIEYDE--KFIKKYCRLLLAAAHRNREKCKKLSVELGYLNNHESAQMID 523


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 234 AADSSSMSNPHSDAISL*TSPAAAFPAINR 145
           A D  S +NPHS  +S    P   FP +NR
Sbjct: 409 AGDLLSSTNPHSTLLSTSVGPLRKFP-LNR 437


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 147 RWPPSSMNFVMASLSICPPNSTTDGEKMIKFLYKY 43
           RWP  S+NF    L     N+   G  M K + K+
Sbjct: 82  RWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKH 116


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -1

Query: 141 PPSSMNFVMASLSICPPNSTTDGEKMIKFLYKYSPYLDSTRFASSAS 1
           P +S NF   S S    NSTT    M   L   S +  +    S+A+
Sbjct: 214 PSASKNFAFTSGSSSTNNSTTSSSSMANGLQSISKHSAAFPLLSNAT 260


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 222 SSMSNPHSDAISL*TSPAAAFPAINRWPPSSMNFVMASLSICPPNSTT 79
           +S + P+S   +  T+PA+A P  +   PS+ N    S S    N  T
Sbjct: 383 ASPAFPNSSTSNPSTAPASASPLASTLKPSTANDTNGSSSSSSSNPRT 430


>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 63  IKFLYKYSPYLDSTRFASSA 4
           I F Y+YS YL++  FA +A
Sbjct: 77  IYFFYQYSTYLENFVFARNA 96


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 32  KYGEYLYKNLIIFSPSVVEFGGQIDSEAITKF 127
           K  E  Y+ L    PS++ F   +   AIT F
Sbjct: 486 KTAEVFYEFLCFLRPSLINFDTILRKSAITSF 517


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 219 SMSNPHSDAISL*TSPAAAFPAINR 145
           SMS+  +D +S  TSP A F  + R
Sbjct: 427 SMSSEQTDMMSPITSPLAPFSGVTR 451


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 108 LSICPPNSTTDGEKMIKFLYKYSPYL 31
           LS  P    +   K  KF Y+Y PY+
Sbjct: 438 LSCFPKKHDSTSRKKPKFPYQYFPYM 463


>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 318

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 174 VMFIEKSHPNADLTWMKNLQQ*LITCN 254
           ++  E ++ N D  ++K ++Q + TCN
Sbjct: 113 ILLSEGANGNVDTAFVKAMEQRISTCN 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,265,772
Number of Sequences: 5004
Number of extensions: 23980
Number of successful extensions: 71
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)