Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_J11
(294 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0771 + 5917550-5917829,5918390-5918526,5918617-5918742,591... 93 4e-20
03_02_0955 - 12690405-12690842,12690940-12691130,12691208-126917... 28 1.5
09_06_0229 + 21709510-21709532,21710021-21710041,21712386-21713577 27 3.5
08_02_0784 + 21183223-21183654,21183892-21184065,21184158-211842... 27 3.5
01_06_1715 - 39380739-39381764,39382428-39382504,39382605-393829... 27 3.5
06_03_1296 - 29104857-29105870 26 4.6
04_04_0590 + 26457514-26457801,26458849-26459325,26459817-264600... 26 4.6
09_04_0136 + 14972687-14973901 26 6.1
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275... 26 6.1
01_06_0786 - 31992357-31992441,31992632-31992752,31993371-319934... 26 6.1
07_03_0742 + 21113682-21114567,21115413-21115552,21115637-211158... 25 8.0
05_01_0341 - 2679404-2680579 25 8.0
03_02_0201 + 6363459-6363934,6364020-6364317,6364452-6364766 25 8.0
02_02_0102 + 6790271-6790366,6790493-6790588,6791794-6791878,679... 25 8.0
01_06_0572 - 30337572-30338107,30338209-30338422,30338505-303388... 25 8.0
>07_01_0771 +
5917550-5917829,5918390-5918526,5918617-5918742,
5919168-5919221,5919344-5919457,5919895-5919950,
5920017-5920058,5920580-5920655,5920765-5920836,
5920908-5921033,5921117-5921221,5921333-5921416,
5921636-5921683
Length = 439
Score = 93.1 bits (221), Expect = 4e-20
Identities = 41/84 (48%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Frame = +2
Query: 2 LADDANLVLSKYGEYLYKNLIIFSPSVVEFGGQIDSEAITKFIDDGGHLLMAGNAAAGDV 181
LADD L L +YG+YLY L++F+PS FGG +D +I +FID G +++A +++A D+
Sbjct: 66 LADDPKLSLHRYGQYLYDGLVLFAPSTPRFGGSVDQNSILEFIDAGHDMILAADSSASDL 125
Query: 182 YREIASECGFDMDEE-SAAVIDHL 250
R IA+ECG D DE+ A VIDH+
Sbjct: 126 IRGIATECGVDFDEDPEAMVIDHI 149
>03_02_0955 -
12690405-12690842,12690940-12691130,12691208-12691718,
12692240-12693171,12693260-12693351,12693430-12693509,
12693568-12693621,12693734-12693850,12693949-12694194,
12694273-12694432,12694512-12694576,12694686-12694877,
12694980-12695061,12695153-12695925
Length = 1310
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 174 PAAAFPAINRWPPSSMNFVMASLS-ICPPN 88
P+AA P + PP ++ V++SLS PPN
Sbjct: 36 PSAAAPLLQALPPDGLDDVLSSLSPASPPN 65
>09_06_0229 + 21709510-21709532,21710021-21710041,21712386-21713577
Length = 411
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Frame = -1
Query: 237 TAADSSSMSNPHS----DAISL*TSPAAAFPAINRWPP 136
TAA S + P D +++ PAA+ P RWPP
Sbjct: 45 TAAPCGSTTTPRDADVDDKMTIVGHPAASLPLETRWPP 82
>08_02_0784 +
21183223-21183654,21183892-21184065,21184158-21184265,
21184403-21184457,21184682-21184876,21185291-21185388,
21186133-21186329,21186408-21186678
Length = 509
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +2
Query: 32 KYGEYLYKNLIIFSPSVVEFGGQIDSEAITKFIDDGGHLLMAGNAAAGDVYREIASECGF 211
K+G+ Y ++S S ++ G + E++ + GH MA + + YR+ + GF
Sbjct: 220 KFGDATYN---LYSHSFLQLGQNVAYESLHDMLSTPGHKSMATHLISQAKYRDPCTPRGF 276
>01_06_1715 -
39380739-39381764,39382428-39382504,39382605-39382991,
39383045-39383251,39384168-39384273
Length = 600
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 207 DLTWMKNLQQ*LITCNYDVTDDG 275
D TW+K L++ L C+Y+VT G
Sbjct: 18 DPTWLKILEKMLRKCSYEVTTCG 40
>06_03_1296 - 29104857-29105870
Length = 337
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -2
Query: 263 HIIVTSDQLLLQILHPCQIRIRMRF 189
H +V S++ ++ ILHPC+ +F
Sbjct: 203 HFLVASNEQVVAILHPCKTGSAFKF 227
>04_04_0590 +
26457514-26457801,26458849-26459325,26459817-26460027,
26460219-26460376,26460461-26460531,26460707-26460812,
26460880-26460966,26461591-26462148,26462245-26462308,
26463352-26463485,26463568-26463621,26464321-26464417,
26465620-26465825,26465901-26465984,26466265-26466330,
26466883-26466956,26467664-26467751,26467830-26467928
Length = 973
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 140 GHLLMAGNAAAGDVYREIASECGFDMDEES 229
GH + + V EIA ECGF ++ +S
Sbjct: 694 GHQFVQNAETSAGVLEEIAVECGFKVEYQS 723
>09_04_0136 + 14972687-14973901
Length = 404
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 99 CPPNSTTDGEKMIKFLYKYSP 37
CPP TTD K+IK L +P
Sbjct: 231 CPPWVTTDARKLIKSLLDPNP 251
>05_01_0351 +
2750253-2751042,2751951-2751958,2752122-2752149,
2754692-2754775,2755780-2757548
Length = 892
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2
Query: 164 HFRPSIDGLHHQ 129
H R SIDG+HHQ
Sbjct: 788 HLRHSIDGMHHQ 799
>01_06_0786 -
31992357-31992441,31992632-31992752,31993371-31993465,
31993595-31993716,31994217-31994354,31994564-31994727,
31994835-31994955,31995049-31995148,31995329-31995412,
31996082-31996143,31996246-31996317,31996447-31996506
Length = 407
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 104 DSEAITKFIDDGGHLLMAGNAA 169
D++++ F+ DGG LLMA + A
Sbjct: 231 DAQSVRMFVADGGELLMAQSYA 252
>07_03_0742 +
21113682-21114567,21115413-21115552,21115637-21115847,
21115947-21116184,21116281-21116431,21116535-21116825
Length = 638
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 177 SPAAAFPAINRWPPSS 130
SPAA PA+N+ PP++
Sbjct: 274 SPAAVVPAVNQTPPAA 289
>05_01_0341 - 2679404-2680579
Length = 391
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 177 SPAAAFPAINRWPPSSMN 124
SPA +P WPPS +N
Sbjct: 371 SPATIYPYTMAWPPSFLN 388
>03_02_0201 + 6363459-6363934,6364020-6364317,6364452-6364766
Length = 362
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 213 SNPHSDAISL*TSPAAAFPAINRWPPSSMNFVMASLSICPP 91
+N S +IS+ TS +A IN W +M + + +C P
Sbjct: 94 ANIQSLSISMPTSDSATPEQINDWLRYAMQHTIKTFKLCSP 134
>02_02_0102 +
6790271-6790366,6790493-6790588,6791794-6791878,
6792263-6792384,6792491-6792515,6792795-6792824,
6793123-6793187,6793710-6793757,6793816-6793848
Length = 199
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 134 HQ*TS*WLHCLSAHRILPPTV-KK*LSSYINIPH 36
HQ T WL+CL +LP + K +S N+P+
Sbjct: 162 HQYTLDWLYCLERKAVLPSFLYKYNMSQDSNLPY 195
>01_06_0572 -
30337572-30338107,30338209-30338422,30338505-30338862,
30338948-30339048,30339185-30339749,30340553-30340664,
30341196-30341372,30341589-30341686,30341859-30341953,
30342078-30342158
Length = 778
Score = 25.4 bits (53), Expect = 8.0
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -1
Query: 252 YK*SITAADSSSMSNPHSDAISL*TSPAAAFPAINRWPP---SSMNFVMASLSICPPNST 82
YK S+ ++ +S + A+S T +AFP+ RW P S FV + P+ T
Sbjct: 71 YKHSLNGF-AALLSEEEATALSARTEVVSAFPSNGRWSPHTTRSWEFVGLEEGVRGPDDT 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,649,081
Number of Sequences: 37544
Number of extensions: 175866
Number of successful extensions: 440
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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