Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_J11
(294 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z36753-9|CAA85337.1| 445|Caenorhabditis elegans Hypothetical pr... 83 4e-17
Z75956-6|CAB61026.2| 472|Caenorhabditis elegans Hypothetical pr... 29 0.76
Z75954-8|CAB61020.2| 472|Caenorhabditis elegans Hypothetical pr... 29 0.76
AJ000259-1|CAA03975.1| 472|Caenorhabditis elegans osm-6 protein. 29 0.76
U00044-4|AAY44000.1| 212|Caenorhabditis elegans Hypothetical pr... 28 1.3
Z68120-4|CAA92202.1| 328|Caenorhabditis elegans Hypothetical pr... 27 1.8
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ... 27 1.8
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z92830-7|CAB07360.1| 659|Caenorhabditis elegans Hypothetical pr... 27 3.1
Z69664-5|CAE17882.2| 360|Caenorhabditis elegans Hypothetical pr... 27 3.1
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1... 26 5.4
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1... 26 5.4
U21321-6|AAG00046.1| 206|Caenorhabditis elegans Hypothetical pr... 26 5.4
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein. 26 5.4
U80453-10|AAN63453.1| 489|Caenorhabditis elegans Hypothetical p... 25 7.1
U80453-9|AAT81206.1| 432|Caenorhabditis elegans Hypothetical pr... 25 7.1
AF100663-1|AAC68979.2| 173|Caenorhabditis elegans Hypothetical ... 25 7.1
AF039037-4|AAC48229.3| 311|Caenorhabditis elegans Protein kinas... 25 7.1
Z54236-6|CAA90981.3| 465|Caenorhabditis elegans Hypothetical pr... 25 9.4
U50309-3|AAG24138.2| 343|Caenorhabditis elegans Seven tm recept... 25 9.4
AF077546-8|AAC26320.2| 649|Caenorhabditis elegans Hypothetical ... 25 9.4
>Z36753-9|CAA85337.1| 445|Caenorhabditis elegans Hypothetical
protein T09A5.11 protein.
Length = 445
Score = 82.6 bits (195), Expect = 4e-17
Identities = 36/81 (44%), Positives = 54/81 (66%)
Frame = +2
Query: 5 ADDANLVLSKYGEYLYKNLIIFSPSVVEFGGQIDSEAITKFIDDGGHLLMAGNAAAGDVY 184
ADD+ L L K+G+ ++ +L I +P V FGG + I+KF+D GG++L+A + GD
Sbjct: 55 ADDSQLALFKHGQLIFDHLFILAPGVQVFGGSLSPSEISKFVDAGGNVLVAAGSNIGDAL 114
Query: 185 REIASECGFDMDEESAAVIDH 247
REIA+E GF+ +E +VIDH
Sbjct: 115 REIAAEHGFEFEEAGTSVIDH 135
>Z75956-6|CAB61026.2| 472|Caenorhabditis elegans Hypothetical
protein R31.3 protein.
Length = 472
Score = 28.7 bits (61), Expect = 0.76
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 59 LIIFSPSVVEFGGQIDSEAITKFIDDGGHL-LMAGNAAAGDVYREIASECGFDMDEES 229
LII P G+I EAI KF+++GG L +++G E+ ++ G ++++S
Sbjct: 65 LIIPQPKTSFGTGEI--EAIWKFVEEGGSLMILSGEGGERQSLNEMIAKYGITVNKDS 120
>Z75954-8|CAB61020.2| 472|Caenorhabditis elegans Hypothetical
protein R31.3 protein.
Length = 472
Score = 28.7 bits (61), Expect = 0.76
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 59 LIIFSPSVVEFGGQIDSEAITKFIDDGGHL-LMAGNAAAGDVYREIASECGFDMDEES 229
LII P G+I EAI KF+++GG L +++G E+ ++ G ++++S
Sbjct: 65 LIIPQPKTSFGTGEI--EAIWKFVEEGGSLMILSGEGGERQSLNEMIAKYGITVNKDS 120
>AJ000259-1|CAA03975.1| 472|Caenorhabditis elegans osm-6 protein.
Length = 472
Score = 28.7 bits (61), Expect = 0.76
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 59 LIIFSPSVVEFGGQIDSEAITKFIDDGGHL-LMAGNAAAGDVYREIASECGFDMDEES 229
LII P G+I EAI KF+++GG L +++G E+ ++ G ++++S
Sbjct: 65 LIIPQPKTSFGTGEI--EAIWKFVEEGGSLMILSGEGGERQSLNEMIAKYGITVNKDS 120
>U00044-4|AAY44000.1| 212|Caenorhabditis elegans Hypothetical
protein K04C2.7 protein.
Length = 212
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2
Query: 290 NSGMFTIIRHIIVTSDQLLLQILHPCQIRIRMRFLY 183
N+ F ++ I T+D+LL+ + HP + + LY
Sbjct: 138 NAYCFGLVILTIATADKLLVALFHPVNAHLNLMILY 173
>Z68120-4|CAA92202.1| 328|Caenorhabditis elegans Hypothetical
protein T24C2.4 protein.
Length = 328
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 144 WPPSSMNFVMASLSICPPNSTTDGEKMIKFLYKYSPY 34
+PP S+N + CP TD E+ I F+YK + +
Sbjct: 271 FPPYSLNLNDIARVFCPGQDATD-EENISFIYKSNDF 306
>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
protein Y51B11A.1 protein.
Length = 1079
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -1
Query: 243 SITAADSSSMSNPHSDAISL*TSPAAAFPAINRWPPSSMNFVMASLSICPPNSTT 79
+ITA +++S P S + T+ A + PPSS N + + + P +T+
Sbjct: 744 TITAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSNTPVQTTTTTAPETTS 798
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -1
Query: 243 SITAADSSSMSNPHSDAISL*TSPAAAFPAINRWPPSSMNFVMASLSICPPNSTT 79
+ITA +++S P S + T+ A + PPSS + + +I P +T+
Sbjct: 882 TITAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPETTS 936
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = -1
Query: 243 SITAADSSSMSNPHSDAISL*TSPAAAFPAINRWPPSSMNFVMASLSICPPNSTT 79
+ITA +++S P S + T+ A + PPSS + + + P +T+
Sbjct: 422 TITAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTS 476
>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
F25C8.3b protein.
Length = 3175
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = -1
Query: 240 ITAADSSSMSNPHSDAISL*TSP--AAAFPAINRWPPSSMNFVMASLSICPPNSTTDGEK 67
+T + + +M++PHSD+ + T+P A++ +I+R M V+ ++ P D E
Sbjct: 2986 MTRSYTPTMADPHSDSSAASTAPRGASSRQSIDRRTSVHMKKVLPTMKEDIPEDPEDSED 3045
Query: 66 MI 61
+I
Sbjct: 3046 VI 3047
>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
F25C8.3a protein.
Length = 3184
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = -1
Query: 240 ITAADSSSMSNPHSDAISL*TSP--AAAFPAINRWPPSSMNFVMASLSICPPNSTTDGEK 67
+T + + +M++PHSD+ + T+P A++ +I+R M V+ ++ P D E
Sbjct: 2995 MTRSYTPTMADPHSDSSAASTAPRGASSRQSIDRRTSVHMKKVLPTMKEDIPEDPEDSED 3054
Query: 66 MI 61
+I
Sbjct: 3055 VI 3056
>Z92830-7|CAB07360.1| 659|Caenorhabditis elegans Hypothetical
protein F11A5.8 protein.
Length = 659
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 104 DSEAITKFIDDGGHLLMAGNAAAGDVYREIASE 202
D + ++D+G HL G A V+R+IA E
Sbjct: 622 DRQTKLSYVDNGIHLTGPGVAKCDKVFRDIAKE 654
>Z69664-5|CAE17882.2| 360|Caenorhabditis elegans Hypothetical
protein K04D7.6 protein.
Length = 360
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/58 (27%), Positives = 22/58 (37%)
Frame = -1
Query: 285 WYVXXXXXXXSYK*SITAADSSSMSNPHSDAISL*TSPAAAFPAINRWPPSSMNFVMA 112
W + +T SSS SN +S + P ++ P NR P FV A
Sbjct: 278 WSISKTTTTAEATIIVTEPTSSSSSNRPIPIVSQSSIPESSIPIPNRIDPEHQEFVAA 335
>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
isoform a protein.
Length = 1409
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -2
Query: 89 ILPPTVKK*LSSYINIPHI 33
ILPPT+ SSYIN HI
Sbjct: 1178 ILPPTIGHADSSYINASHI 1196
>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
isoform b protein.
Length = 1444
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -2
Query: 89 ILPPTVKK*LSSYINIPHI 33
ILPPT+ SSYIN HI
Sbjct: 1213 ILPPTIGHADSSYINASHI 1231
>U21321-6|AAG00046.1| 206|Caenorhabditis elegans Hypothetical
protein ZK177.3 protein.
Length = 206
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -1
Query: 126 NFVMASLSICPPNSTTDGEKMIKFLYKYSPYLDSTRFAS 10
++ + S CPP + I++ Y +PY D T F S
Sbjct: 139 SYDLPMFSQCPPMNGIPVSTPIEYPYSQNPYQDHTPFDS 177
>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
Length = 1409
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -2
Query: 89 ILPPTVKK*LSSYINIPHI 33
ILPPT+ SSYIN HI
Sbjct: 1178 ILPPTIGHADSSYINASHI 1196
>U80453-10|AAN63453.1| 489|Caenorhabditis elegans Hypothetical
protein C23H3.9b protein.
Length = 489
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 95 GQIDSEAITKFIDDGGHLLMAGNAAAGDVYREIAS--ECGFDMDEESAAVIDH 247
GQ+++ ++D G++++ A+ D R + S + +D+ + VI H
Sbjct: 286 GQVEAVGAITLVNDNGYIVLIDTGASSDTERLLHSLAKESVTLDQIDSVVITH 338
>U80453-9|AAT81206.1| 432|Caenorhabditis elegans Hypothetical
protein C23H3.9d protein.
Length = 432
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 95 GQIDSEAITKFIDDGGHLLMAGNAAAGDVYREIAS--ECGFDMDEESAAVIDH 247
GQ+++ ++D G++++ A+ D R + S + +D+ + VI H
Sbjct: 229 GQVEAVGAITLVNDNGYIVLIDTGASSDTERLLHSLAKESVTLDQIDSVVITH 281
>AF100663-1|AAC68979.2| 173|Caenorhabditis elegans Hypothetical
protein K08B4.2 protein.
Length = 173
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 20 LVLSKYGEYLYKNLIIFSPSVVEFGGQIDSEAITK 124
L +S+YG ++ ++P F ID E +TK
Sbjct: 11 LTVSQYGSAFEFQVLDYTPVEFSFNQDIDEEVLTK 45
>AF039037-4|AAC48229.3| 311|Caenorhabditis elegans Protein kinase
protein 34 protein.
Length = 311
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 164 AAAGDVYREIASECGFDMDE 223
A GD+Y +I S C F ++E
Sbjct: 106 ADGGDLYEKITSGCSFSLEE 125
>Z54236-6|CAA90981.3| 465|Caenorhabditis elegans Hypothetical
protein C27B7.6 protein.
Length = 465
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 99 CPPNSTTDGEKMIKFLYKYSPYLDSTRF 16
C N +G+KM FL +YS + T+F
Sbjct: 347 CQFNVPPNGQKMSPFLGEYSMFAHETQF 374
>U50309-3|AAG24138.2| 343|Caenorhabditis elegans Seven tm receptor
protein 145 protein.
Length = 343
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 132 SMNFVMASLSICPPNSTTDGEKMIKFLYKYSP 37
S F L++C P+S + GE+ I F Y + P
Sbjct: 103 SAQFFYRFLAVCKPHSLSHGEERILF-YLFFP 133
>AF077546-8|AAC26320.2| 649|Caenorhabditis elegans Hypothetical
protein T08E11.1 protein.
Length = 649
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 116 ITKFIDDGGHLLMAGNAAAGDVYREIASECGFDMD 220
I F D H+L +A +++ + CG+DMD
Sbjct: 403 INNFSSDLVHILKNQTSALKELHVTLEPSCGWDMD 437
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,093,960
Number of Sequences: 27780
Number of extensions: 138440
Number of successful extensions: 395
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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