Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_J10
(477 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 159 3e-40
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 159 3e-40
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 48 6e-07
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 30 0.21
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 1.5
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch... 25 4.5
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 25 4.5
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 25 7.9
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch... 25 7.9
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 159 bits (385), Expect = 3e-40
Identities = 74/91 (81%), Positives = 82/91 (90%)
Frame = +1
Query: 181 KKFGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAV 360
+K GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A
Sbjct: 53 EKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAK 112
Query: 361 GDIPGVRFKVVKVANVSLLALYKEKKERPRS 453
GDIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 113 GDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143
Score = 84.2 bits (199), Expect = 9e-18
Identities = 35/55 (63%), Positives = 45/55 (81%)
Frame = +3
Query: 24 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKV 188
MGKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKI 55
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 159 bits (385), Expect = 3e-40
Identities = 74/91 (81%), Positives = 82/91 (90%)
Frame = +1
Query: 181 KKFGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAV 360
+K GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A
Sbjct: 53 EKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAK 112
Query: 361 GDIPGVRFKVVKVANVSLLALYKEKKERPRS 453
GDIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 113 GDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143
Score = 84.2 bits (199), Expect = 9e-18
Identities = 35/55 (63%), Positives = 45/55 (81%)
Frame = +3
Query: 24 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKV 188
MGKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKI 55
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 48.4 bits (110), Expect = 6e-07
Identities = 31/77 (40%), Positives = 48/77 (62%)
Frame = +1
Query: 166 RASSSKKFGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGR 345
R ++ F V+ K+PNSA+RK RV+L G+ VTA++P G ++ +E+ VL+ G GR
Sbjct: 52 RGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLLRG-GR 107
Query: 346 KGHAVGDIPGVRFKVVK 396
D PGV++ VV+
Sbjct: 108 ----AQDCPGVQYHVVR 120
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 29.9 bits (64), Expect = 0.21
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 431 SLYRARSDTFATLTTLNLTPGMSPTAWP 348
S Y+ + DT+AT TLN PT WP
Sbjct: 1151 SKYKIK-DTYATFQTLNYIQNQQPTKWP 1177
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 1.5
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = -2
Query: 431 SLYRARSDTFATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSM 303
++Y + + +F T ++++ G S L P PA++TSSFS++
Sbjct: 161 TIYSSATSSFPYSTDVSVSTGTSTDIVTLPP-PASSTSSFSTI 202
>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 257
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -2
Query: 242 CTRTHLRMAEFGCLASTPNFFEDDALSMRCTTEGVRLPSRT 120
C + +L++ + A ++FE + + + CT G R PS+T
Sbjct: 35 CRKIYLKLG-WATKAVGSSYFESEKIKIACTVSGPR-PSKT 73
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 25.4 bits (53), Expect = 4.5
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 76 ASSDGPTRNSKKPTWVRDGRRTPSVVHLMLRASSSKKFGVEAK 204
A+S+ P + KK RRT S +H +L A S++ EAK
Sbjct: 118 AASEVPKKKYKKIKVDPSARRTSSRMHTVLMAQSTETRLQEAK 160
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 24.6 bits (51), Expect = 7.9
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 129 WKANPFGGASHAKGIVLEKVWR 194
WKA G AS A LEK W+
Sbjct: 158 WKATAIGRASKAAREYLEKNWK 179
>SPBC56F2.12 |ilv5||acetohydroxyacid
reductoisomerase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 24.6 bits (51), Expect = 7.9
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 280 PRDGCLNHIEENDEVLVAGFGRKGHAVG 363
PR+ +++ + ND + + G+G +GH G
Sbjct: 74 PREKLVDYFK-NDTLAIIGYGSQGHGQG 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,136,145
Number of Sequences: 5004
Number of extensions: 44769
Number of successful extensions: 128
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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