Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_J10
(477 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 170 6e-43
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 170 6e-43
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 83 1e-16
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 4e-07
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 31 0.36
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293 31 0.64
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 29 2.6
06_03_0416 + 20568087-20568702,20568767-20570313 28 3.4
04_04_1489 - 33938426-33939363,33939429-33939813 28 3.4
01_02_0085 - 10967407-10968291,10970481-10970957 28 4.5
06_03_0672 + 23359510-23361253,23389969-23390203,23392078-233922... 27 7.8
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 27 7.8
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 170 bits (413), Expect = 6e-43
Identities = 77/91 (84%), Positives = 85/91 (93%)
Frame = +1
Query: 181 KKFGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAV 360
+K G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAV
Sbjct: 52 EKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAV 111
Query: 361 GDIPGVRFKVVKVANVSLLALYKEKKERPRS 453
GDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 112 GDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
Score = 80.6 bits (190), Expect = 6e-16
Identities = 35/55 (63%), Positives = 41/55 (74%)
Frame = +3
Query: 24 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKV 188
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 54
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 170 bits (413), Expect = 6e-43
Identities = 77/91 (84%), Positives = 85/91 (93%)
Frame = +1
Query: 181 KKFGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAV 360
+K G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAV
Sbjct: 222 EKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAV 281
Query: 361 GDIPGVRFKVVKVANVSLLALYKEKKERPRS 453
GDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 282 GDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 166 bits (404), Expect = 7e-42
Identities = 75/89 (84%), Positives = 83/89 (93%)
Frame = +1
Query: 181 KKFGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAV 360
+K G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAV
Sbjct: 52 EKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAV 111
Query: 361 GDIPGVRFKVVKVANVSLLALYKEKKERP 447
GDIPGVRFKVVKV+ VSLLAL+KEKKE+P
Sbjct: 112 GDIPGVRFKVVKVSGVSLLALFKEKKEKP 140
Score = 81.8 bits (193), Expect = 3e-16
Identities = 36/61 (59%), Positives = 44/61 (72%)
Frame = +3
Query: 6 RVRAIVMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEK 185
R ++ MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK
Sbjct: 165 RCPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEK 223
Query: 186 V 188
+
Sbjct: 224 I 224
Score = 80.6 bits (190), Expect = 6e-16
Identities = 35/55 (63%), Positives = 41/55 (74%)
Frame = +3
Query: 24 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKV 188
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 54
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 82.6 bits (195), Expect = 1e-16
Identities = 36/52 (69%), Positives = 42/52 (80%)
Frame = +1
Query: 181 KKFGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 336
+K G+EAKQPNSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 123 EKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
Score = 76.6 bits (180), Expect = 1e-14
Identities = 41/79 (51%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +3
Query: 6 RVRAIVMG-KPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLE 182
RVRA G K G+ RK HRR QRWADK +KK+H G WK PF G+SHAKGIVLE
Sbjct: 65 RVRAWSCGAKTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLE 123
Query: 183 KVWR*SQAAEFSHS*VCSC 239
K+ A+ +S +C C
Sbjct: 124 KI---GIEAKQPNSAICKC 139
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 4e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +1
Query: 316 DEVLVAGFGRKGHAVGDIPGVRFKVVK 396
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 31.5 bits (68), Expect = 0.36
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -2
Query: 224 RMAEFGCLASTPNFFEDDALSMRCTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRA 45
++ GC A T DA S+ T ++P H+ + +G S A ++ VLAR A
Sbjct: 160 QLTAVGCWALTEPNHGSDASSL--ITTATKVPGGWHIDGQKRWIGNSTFADVLVVLARNA 217
Query: 44 NTPRFTHY 21
NT + +
Sbjct: 218 NTKQLNGF 225
>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
Length = 352
Score = 30.7 bits (66), Expect = 0.64
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -2
Query: 398 TLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAV 267
TL+ LNL G SP P P P + SM + QP TN V
Sbjct: 254 TLSGLNLNLGSSPAMPPPPPPPPQSILQAMSMPMNQPRSTTNQV 297
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 17 YR-NG*TSGYSHGAQARESSSRAAMGRQGIQKSP 115
YR +G +GY HG + + SSR + R G+ +P
Sbjct: 187 YRVHGMATGYCHGCRCQRCSSRPSRDRDGVAWAP 220
>06_03_0416 + 20568087-20568702,20568767-20570313
Length = 720
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 238 HEHTYEWLNSAAWLQRQTFSRTMPLA 161
H Y+W+N +AW+ F T P A
Sbjct: 250 HMRLYQWINYSAWVPSDIFDITDPCA 275
>04_04_1489 - 33938426-33939363,33939429-33939813
Length = 440
Score = 28.3 bits (60), Expect = 3.4
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +1
Query: 169 ASSSKKFGVEA--KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFG 342
+S KK V A K P+ C+ + K KVT+ + + + + + LV+ F
Sbjct: 262 SSKKKKMAVVAIKKAPSLFAPLCL---MAKGSSKVTSLSDNESDDDCDDVSYDELVSMF- 317
Query: 343 RKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 438
+ HA + V+FK +K + SL LY+E K
Sbjct: 318 EELHAYSEKEIVKFKALKKDHASLEVLYEELK 349
>01_02_0085 - 10967407-10968291,10970481-10970957
Length = 453
Score = 27.9 bits (59), Expect = 4.5
Identities = 22/79 (27%), Positives = 31/79 (39%)
Frame = -3
Query: 238 HEHTYEWLNSAAWLQRQTFSRTMPLA*DAPPKGFAFHLVPMWAFLNSLSAHRCSRR*FTC 59
H H + W + + + PL D PK FH + AF + A T
Sbjct: 151 HHHLFSWCKEVYLVTPEEKRKWSPLPRDQYPKPLVFHDGRL-AFRPTFQA--------TL 201
Query: 58 LRAVRIPRGLPITIARTLV 2
+P LP+TI RTL+
Sbjct: 202 AMLTWLPFSLPLTIFRTLI 220
>06_03_0672 +
23359510-23361253,23389969-23390203,23392078-23392234,
23392535-23392597
Length = 732
Score = 27.1 bits (57), Expect = 7.8
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = +1
Query: 172 SSSKKFGVEA--KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGR 345
+SSKK V A + P+ C+ + K KVT+ + + + + + LV+ F
Sbjct: 349 ASSKKMTVVAIKEAPSLFAPLCL---MAKGSSKVTSLSDSESDDDCDDVSYDELVSMF-E 404
Query: 346 KGHAVGDIPGVRFKVVKVANVSLLALYKEKK 438
+ HA + V+FK +K + SL LY+E K
Sbjct: 405 ELHAYSEKEIVKFKALKKDHASLEVLYEELK 435
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 392 TTLNLTPGMSPTAWPLRPNPATNTSS 315
TT TP M+P P P+P TN ++
Sbjct: 310 TTTTPTPFMNPVTAPTMPSPVTNPAT 335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,775,567
Number of Sequences: 37544
Number of extensions: 329403
Number of successful extensions: 969
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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