Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_J09
(552 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 77 2e-15
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 27 1.4
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 27 1.4
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 27 2.4
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 26 3.2
SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 4.2
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 26 4.2
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 25 5.6
SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce... 25 5.6
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 25 7.4
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 25 9.8
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 9.8
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 76.6 bits (180), Expect = 2e-15
Identities = 43/121 (35%), Positives = 70/121 (57%), Gaps = 8/121 (6%)
Frame = +3
Query: 165 NGLKIVTEYKYDNDNKKVKIVRTYK---IEKRVVSKSIAMRKTWSKFGDSANDKPGPNPA 335
+G K + E++ D++ KKVK+ R + I +RV ++A RK W KFG A G +
Sbjct: 29 DGTKTMIEFRIDDNGKKVKVTRVIRKTVITERV-QHAVAERKKWKKFGKEAGKNSGVDAR 87
Query: 336 TTNVSEDVFMQ----FITSKEESQRPDDGELDGLKPQS-NNVIFKCRICQGDHMTINCPF 500
TT+V E+V ++ + T+KEE Q D+ L K ++ + + +CR C+G+H T CP+
Sbjct: 88 TTSVGENVQLRLQLGWTTTKEEEQ--DEAALAAAKVKAKGSSVVRCRACKGNHFTAQCPY 145
Query: 501 K 503
K
Sbjct: 146 K 146
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/62 (22%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 84 QMRFNLHGLMRLKLTNVALPPPSEV-VENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVS 260
+M FN+ GLM K+ ++ P + GL+++ + K + + +++ T +I + V +
Sbjct: 858 EMAFNILGLMSQKVVDLCQSEPIYANLNGGLELLPDLKDLSTRLRTELLETAEIRRAVAA 917
Query: 261 KS 266
++
Sbjct: 918 ET 919
Score = 25.0 bits (52), Expect = 7.4
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = +3
Query: 147 PSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAMRKTWSKFGDSANDKPGP 326
PS + K + KY+N + + I R V+ S R+ + F D D+P
Sbjct: 50 PSPTLAGMAKRTLKLKYENMDAALSINR------EVLCYSKDAREIYYNFEDEVADEPAE 103
Query: 327 NPATTNVSEDV 359
PA+T+ + V
Sbjct: 104 APASTSSTPKV 114
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 141 PPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIA 272
PP ++VV+ K D++ + +V TY I K V+ +IA
Sbjct: 337 PPQADVVQACADKAISIKKSTDSRLLVVVSTYSIGKEKVAVAIA 380
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 26.6 bits (56), Expect = 2.4
Identities = 23/88 (26%), Positives = 32/88 (36%)
Frame = +3
Query: 201 NDNKKVKIVRTYKIEKRVVSKSIAMRKTWSKFGDSANDKPGPNPATTNVSEDVFMQFITS 380
N + V+ +TY V SKS+ S +D T D + S
Sbjct: 69 NSGRPVEAFKTYPSTPAVPSKSVLFHFYEPDENFSLSD-------TGRTKSDTALAARES 121
Query: 381 KEESQRPDDGELDGLKPQSNNVIFKCRI 464
E+S+ P D G+KP N C I
Sbjct: 122 SEKSEVPRDTRSAGIKPYKENNSSNCAI 149
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 363 MQFITSKEESQRPDDGELDGLKPQSNNVIFK 455
+++ + +E Q+PD EL +K Q++ IFK
Sbjct: 203 VEYWSPEEPFQKPDTAELFNMKSQTDLYIFK 233
>SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 228
Score = 25.8 bits (54), Expect = 4.2
Identities = 22/102 (21%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Frame = +3
Query: 138 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAMRKTWSKFGDSANDK 317
+P PS + L I + + N+N++++ V+ ++ + +V A+ W+ + N +
Sbjct: 91 VPHPSNRFDFALSIAVIHHFSNENRRLQAVQ--EVLRPLVKGGKALFFVWAL--EQKNSR 146
Query: 318 PGPNPATTNVSEDVFMQFITSKE-ESQRPDDGELDGLKPQSN 440
G + + +DV++ +I ++ E EL G P N
Sbjct: 147 RG---FSEDGPQDVYVPWILKRQYEYPNAKPEELKGHDPAEN 185
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 82 R*HDSYFQHGSLMHQFTQYSLVPNSC 5
R H +FQ ++ QF + ++PN C
Sbjct: 319 RKHAEFFQQDQVLQQFIELVVLPNIC 344
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 361 LCNSSLAKRKVNDLMMVSLMGLSHNPTMSSSS 456
LC++++ + + D V L+GLS+ T +S +
Sbjct: 456 LCDTNIGEESLPDAANVPLLGLSNKATTASET 487
>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 450 FKCRICQGDHMTINCPFKHTQIAQTNANEAVKAA 551
F+CR+C H N HTQ + N A + A
Sbjct: 54 FECRLCLTTHANENSYLTHTQGKKHQTNLARRQA 87
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 7.4
Identities = 19/81 (23%), Positives = 37/81 (45%)
Frame = +3
Query: 108 LMRLKLTNVALPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAMRKTW 287
LM + + L +E+ E+ +K YKY + +I + + EKR KS R
Sbjct: 450 LMAKETKGLTLEEVNELYESDIKPWDSYKYVRQIESRRIHFSKEEEKREREKSKGYRGQE 509
Query: 288 SKFGDSANDKPGPNPATTNVS 350
+F ++A+ + + ++ S
Sbjct: 510 ERFIENADGADNDDSSASSES 530
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +3
Query: 435 SNNVIF-KCRICQGDHMTINCP 497
+ ++F K R+ GDH+T+ CP
Sbjct: 209 ARGILFGKMRLELGDHVTVRCP 230
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 24.6 bits (51), Expect = 9.8
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +3
Query: 258 SKSIAMRKTWSKFGDSANDKPGPNPATTNVSEDVFMQFITSKEESQRPDDGELDGLKPQS 437
SK A FG +A P P P+T ++ + ++++S+ D D QS
Sbjct: 151 SKHNAFYDASQTFGSTAKVAPAPAPSTKTPLANISKPVVQAQKDSK---DNSWDDSSKQS 207
Query: 438 N 440
N
Sbjct: 208 N 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,249,840
Number of Sequences: 5004
Number of extensions: 43659
Number of successful extensions: 158
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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