Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_J09
(552 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1015 + 33512023-33512359,33513550-33514082 77 9e-15
02_05_1014 + 33510108-33510471,33510857-33511362 58 5e-09
02_01_0519 - 3748415-3748432,3749010-3749041,3749474-3749606,374... 33 0.20
11_04_0309 - 16205023-16205964,16207184-16207228 29 1.9
02_05_1259 + 35294797-35295600,35295776-35295841,35296390-35296491 28 5.7
03_05_0511 + 25056018-25059107 27 7.5
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650... 27 7.5
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 27 10.0
01_06_1477 + 37645143-37647425 27 10.0
01_02_0028 - 10340253-10340619,10341110-10341615 27 10.0
01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448 27 10.0
>02_05_1015 + 33512023-33512359,33513550-33514082
Length = 289
Score = 77.0 bits (181), Expect = 9e-15
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Frame = +3
Query: 162 ENGLKIVTEYKYDNDNKKVKIVRTYKIEKRV---VSKSIAMRKTWSKFGDSANDKPGPNP 332
ENG K V EY++D+ KVK+ RT+++ K +SKS R++W KFGD+ + G
Sbjct: 37 ENGFKKVVEYRFDDKGNKVKVTRTFRVRKIARARLSKSAIERRSWPKFGDAVQEDVGARL 96
Query: 333 ATTNVSEDVFMQFITSKEESQRPDDGELDGLKPQSNNVIFKCRIC--QGDHMTINCPFK 503
+ E V + +++ P D L +S V+ CR C +GDH T CP+K
Sbjct: 97 TMVSTEEIVLERPRAPGSKAEEP-SASGDPLASKSGAVLMVCRTCGKKGDHWTSKCPYK 154
>02_05_1014 + 33510108-33510471,33510857-33511362
Length = 289
Score = 58.0 bits (134), Expect = 5e-09
Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 9/138 (6%)
Frame = +3
Query: 144 PPSEVV---ENGLKIVTEYKYDNDNKKVKIVRTYKIEKRV---VSKSIAMRKTWSKFGDS 305
PP V+ ENG+K EY+ + + K V++ T ++ + V+K A R+ W+KFGD+
Sbjct: 36 PPRVVIGPDENGIKKTVEYRLNEEGKAVRVTTTTRVREVARTRVTKRAAERRGWAKFGDA 95
Query: 306 A-NDKPGPNPATTNVSEDVFMQFITSKEESQRPDDGELDGLKPQSNNVIFKCRIC--QGD 476
A ND G + E V + +S+ P LD + CRIC +G
Sbjct: 96 AHNDDAGARLTVVSPEEIVLERPSAPGSKSEDPLIPALD-----KGAALMVCRICNAKGK 150
Query: 477 HMTINCPFKHTQIAQTNA 530
H T CP K Q +A
Sbjct: 151 HWTSKCPNKDFAPLQLDA 168
>02_01_0519 -
3748415-3748432,3749010-3749041,3749474-3749606,
3749702-3749765,3749948-3750010,3750101-3750243,
3750358-3750495,3750570-3750691,3750798-3750963,
3751058-3751180,3751325-3751396,3751484-3751591,
3752730-3752846,3752953-3753040,3753162-3753253,
3753378-3753490,3753994-3754127,3754209-3754564,
3754649-3754861
Length = 764
Score = 32.7 bits (71), Expect = 0.20
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 123 LTNVALPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVS-KSIAMRKTWSKFG 299
L VA PP+E N L+ V + KY D + KIE+++VS KS + W KF
Sbjct: 354 LLQVARQPPNERDYNILQTVHQNKYQEDPHAKEF--GIKIEEKLVSIKSRILPAPWLKFH 411
Query: 300 DS 305
DS
Sbjct: 412 DS 413
>11_04_0309 - 16205023-16205964,16207184-16207228
Length = 328
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Frame = -2
Query: 548 SFDSFISISLCD-LGMLEWTIYSHVITLTD---TALEDDIVGLWLKPIKLTIIRSLTFLF 381
S ++F+ + + D + L+ T+ S TL D +AL+DD V W + +K + + L
Sbjct: 23 SIEAFMQLGVSDEINWLKGTVSSIKKTLADADYSALKDDTVRSWSRKLKDVMYEAADILD 82
Query: 380 ASDEL 366
DE+
Sbjct: 83 VCDEM 87
>02_05_1259 + 35294797-35295600,35295776-35295841,35296390-35296491
Length = 323
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +3
Query: 300 DSANDKPGPNPATTNVSEDVFMQFITSKEESQRPDDGE 413
D+ N+K P NV+ + + + E +PDD E
Sbjct: 170 DANNEKKTEEPTVQNVNRVIDSSKVVASSEQNKPDDSE 207
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 402 DDGELDGLKPQSNNVIFKCRI-CQGDHMTINCPFKHTQIAQTNANEAVK 545
D+ E D +PQ NV+F C + G + F ++ NAN +K
Sbjct: 201 DEDEEDAFQPQKGNVVFACALDGWGFRIHQFAEFYAAKLPNINANALLK 249
>01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,
6501915-6502156,6502229-6502457,6503020-6503184,
6503279-6503605,6504150-6504191,6504333-6504400,
6504748-6504934,6506249-6506311,6506748-6506790,
6506919-6507019,6507110-6507184,6507359-6507445,
6507593-6507682,6507906-6507992,6508585-6508783,
6509113-6509177,6509502-6509606,6509726-6509871,
6510100-6510224,6510335-6510437,6510482-6510596,
6510734-6510869,6511298-6511387,6511484-6511578,
6511698-6511763,6511868-6511936,6512034-6512147,
6512241-6512448,6512545-6512600,6512818-6513552
Length = 1671
Score = 27.5 bits (58), Expect = 7.5
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = +3
Query: 93 FNLHGLMRLKLTNVALPPPSEVVENGLKIVTEYKYDNDNKKVKI-VRTYKIEKRVVSKSI 269
+++ G M L+ +N PS + NG +++ K DN + R Y + + + +
Sbjct: 1440 YHVRGSMELQTSNSGPDEPSNIQSNGEELLQSSKQRRDNGIFFVPQRPYMVLGTLRQQLL 1499
Query: 270 AMRKTWSKFGDSANDKPGPNPATTNVS 350
T S ND +P T VS
Sbjct: 1500 YPTWTEDVCHSSNNDPQSTDPLTFEVS 1526
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 27.1 bits (57), Expect = 10.0
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Frame = +3
Query: 150 SEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAMRKTWSKFGDSANDKPGPN 329
SE +++G I + + + K+ +TY K A W K D AND+
Sbjct: 112 SEDIKSGYSITLTFSPNPYFEDTKLTKTYSFSDDEAVKVKATSIRWKKGMDIANDRAYTK 171
Query: 330 PATTN--VSEDVFMQFITSKEES 392
+ E F F + K S
Sbjct: 172 KGDKRILIDESFFTWFNSEKNRS 194
>01_06_1477 + 37645143-37647425
Length = 760
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 53 TVLKIGIMSPADEIQSSWADEVEI 124
TVLK IM+P + +SWA+ V +
Sbjct: 492 TVLKPDIMAPGSLVLASWAESVAV 515
>01_02_0028 - 10340253-10340619,10341110-10341615
Length = 290
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/53 (24%), Positives = 22/53 (41%)
Frame = +3
Query: 252 VVSKSIAMRKTWSKFGDSANDKPGPNPATTNVSEDVFMQFITSKEESQRPDDG 410
VV + W G P P+P ++ VSE ++ K+++ P G
Sbjct: 22 VVVAASGAEARWYGGGGGGGYSPSPSPVSSIVSEQLYASLFLHKDDAACPARG 74
>01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448
Length = 850
Score = 27.1 bits (57), Expect = 10.0
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +3
Query: 78 HLQMRFNLHGLMRLKLTNVA---LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEK 248
H + +L L RL L A +PP S + ++ L++ +Y +D+D + ++ R ++
Sbjct: 92 HGETLASLAPLRRLALPACAHRRVPPSSSIAKSILQLEHDYPWDDDPESIRRRRVFQQTP 151
Query: 249 RVVSKSIAMRKTWSKFGDSAN 311
+V A + + +FG A+
Sbjct: 152 NLVVLFTAAAE-FEEFGGDAD 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,654,367
Number of Sequences: 37544
Number of extensions: 281289
Number of successful extensions: 867
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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