Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_J09
(552 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U96074-1|AAC78728.1| 320|Homo sapiens translation initiation fa... 144 1e-34
CR457134-1|CAG33415.1| 320|Homo sapiens EIF3S4 protein. 144 1e-34
BT006889-1|AAP35535.1| 320|Homo sapiens eukaryotic translation ... 144 1e-34
BC008469-1|AAH08469.1| 320|Homo sapiens eukaryotic translation ... 144 1e-34
BC000733-1|AAH00733.1| 320|Homo sapiens eukaryotic translation ... 144 1e-34
AF094850-1|AAG15419.1| 320|Homo sapiens eukaryotic translation ... 144 1e-34
AF092453-1|AAG15396.1| 320|Homo sapiens eukaryotic translation ... 144 1e-34
AF020833-1|AAB71866.1| 320|Homo sapiens eukaryotic translation ... 144 1e-34
BC040275-1|AAH40275.1| 1181|Homo sapiens RASGRF1 protein protein. 31 3.6
>U96074-1|AAC78728.1| 320|Homo sapiens translation initiation
factor eIF3 p44 subunit protein.
Length = 320
Score = 144 bits (350), Expect = 1e-34
Identities = 70/130 (53%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Frame = +3
Query: 123 LTNVALPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAMRKTWSKFGD 302
L LPPP EV+ +K VTEYK D D KK KIVRT++IE R SK++A RK W KFG+
Sbjct: 48 LPGAPLPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIETRKASKAVARRKNWKKFGN 107
Query: 303 SANDKPGPNPATTNVSEDVFMQFITSKEE-SQRPDDGELDGLKPQSNNVIFKCRICQGDH 479
S D PGPN ATT VS+DV M FITSKE+ + + ++ ++ LK Q I CRIC+GDH
Sbjct: 108 SEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQEEEDPMNKLKGQK---IVSCRICKGDH 164
Query: 480 MTINCPFKHT 509
T CP+K T
Sbjct: 165 WTTRCPYKDT 174
>CR457134-1|CAG33415.1| 320|Homo sapiens EIF3S4 protein.
Length = 320
Score = 144 bits (350), Expect = 1e-34
Identities = 70/130 (53%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Frame = +3
Query: 123 LTNVALPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAMRKTWSKFGD 302
L LPPP EV+ +K VTEYK D D KK KIVRT++IE R SK++A RK W KFG+
Sbjct: 48 LPGAPLPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIETRKASKAVARRKNWKKFGN 107
Query: 303 SANDKPGPNPATTNVSEDVFMQFITSKEE-SQRPDDGELDGLKPQSNNVIFKCRICQGDH 479
S D PGPN ATT VS+DV M FITSKE+ + + ++ ++ LK Q I CRIC+GDH
Sbjct: 108 SEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQEEEDPMNKLKGQK---IVSCRICKGDH 164
Query: 480 MTINCPFKHT 509
T CP+K T
Sbjct: 165 WTTRCPYKDT 174
>BT006889-1|AAP35535.1| 320|Homo sapiens eukaryotic translation
initiation factor 3, subunit 4 delta, 44kDa protein.
Length = 320
Score = 144 bits (350), Expect = 1e-34
Identities = 70/130 (53%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Frame = +3
Query: 123 LTNVALPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAMRKTWSKFGD 302
L LPPP EV+ +K VTEYK D D KK KIVRT++IE R SK++A RK W KFG+
Sbjct: 48 LPGAPLPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIETRKASKAVARRKNWKKFGN 107
Query: 303 SANDKPGPNPATTNVSEDVFMQFITSKEE-SQRPDDGELDGLKPQSNNVIFKCRICQGDH 479
S D PGPN ATT VS+DV M FITSKE+ + + ++ ++ LK Q I CRIC+GDH
Sbjct: 108 SEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQEEEDPMNKLKGQK---IVSCRICKGDH 164
Query: 480 MTINCPFKHT 509
T CP+K T
Sbjct: 165 WTTRCPYKDT 174
>BC008469-1|AAH08469.1| 320|Homo sapiens eukaryotic translation
initiation factor 3, subunit 4 delta, 44kDa protein.
Length = 320
Score = 144 bits (350), Expect = 1e-34
Identities = 70/130 (53%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Frame = +3
Query: 123 LTNVALPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAMRKTWSKFGD 302
L LPPP EV+ +K VTEYK D D KK KIVRT++IE R SK++A RK W KFG+
Sbjct: 48 LPGAPLPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIETRKASKAVARRKNWKKFGN 107
Query: 303 SANDKPGPNPATTNVSEDVFMQFITSKEE-SQRPDDGELDGLKPQSNNVIFKCRICQGDH 479
S D PGPN ATT VS+DV M FITSKE+ + + ++ ++ LK Q I CRIC+GDH
Sbjct: 108 SEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQEEEDPMNKLKGQK---IVSCRICKGDH 164
Query: 480 MTINCPFKHT 509
T CP+K T
Sbjct: 165 WTTRCPYKDT 174
>BC000733-1|AAH00733.1| 320|Homo sapiens eukaryotic translation
initiation factor 3, subunit 4 delta, 44kDa protein.
Length = 320
Score = 144 bits (350), Expect = 1e-34
Identities = 70/130 (53%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Frame = +3
Query: 123 LTNVALPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAMRKTWSKFGD 302
L LPPP EV+ +K VTEYK D D KK KIVRT++IE R SK++A RK W KFG+
Sbjct: 48 LPGAPLPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIETRKASKAVARRKNWKKFGN 107
Query: 303 SANDKPGPNPATTNVSEDVFMQFITSKEE-SQRPDDGELDGLKPQSNNVIFKCRICQGDH 479
S D PGPN ATT VS+DV M FITSKE+ + + ++ ++ LK Q I CRIC+GDH
Sbjct: 108 SEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQEEEDPMNKLKGQK---IVSCRICKGDH 164
Query: 480 MTINCPFKHT 509
T CP+K T
Sbjct: 165 WTTRCPYKDT 174
>AF094850-1|AAG15419.1| 320|Homo sapiens eukaryotic translation
initiation factor 3 subunit p42/p44 protein.
Length = 320
Score = 144 bits (350), Expect = 1e-34
Identities = 70/130 (53%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Frame = +3
Query: 123 LTNVALPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAMRKTWSKFGD 302
L LPPP EV+ +K VTEYK D D KK KIVRT++IE R SK++A RK W KFG+
Sbjct: 48 LPGAPLPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIETRKASKAVARRKNWKKFGN 107
Query: 303 SANDKPGPNPATTNVSEDVFMQFITSKEE-SQRPDDGELDGLKPQSNNVIFKCRICQGDH 479
S D PGPN ATT VS+DV M FITSKE+ + + ++ ++ LK Q I CRIC+GDH
Sbjct: 108 SEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQEEEDPMNKLKGQK---IVSCRICKGDH 164
Query: 480 MTINCPFKHT 509
T CP+K T
Sbjct: 165 WTTRCPYKDT 174
>AF092453-1|AAG15396.1| 320|Homo sapiens eukaryotic translation
initiation factor 3 subunit p42/p44 protein.
Length = 320
Score = 144 bits (350), Expect = 1e-34
Identities = 70/130 (53%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Frame = +3
Query: 123 LTNVALPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAMRKTWSKFGD 302
L LPPP EV+ +K VTEYK D D KK KIVRT++IE R SK++A RK W KFG+
Sbjct: 48 LPGAPLPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIETRKASKAVARRKNWKKFGN 107
Query: 303 SANDKPGPNPATTNVSEDVFMQFITSKEE-SQRPDDGELDGLKPQSNNVIFKCRICQGDH 479
S D PGPN ATT VS+DV M FITSKE+ + + ++ ++ LK Q I CRIC+GDH
Sbjct: 108 SEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQEEEDPMNKLKGQK---IVSCRICKGDH 164
Query: 480 MTINCPFKHT 509
T CP+K T
Sbjct: 165 WTTRCPYKDT 174
>AF020833-1|AAB71866.1| 320|Homo sapiens eukaryotic translation
initiation factor 3 subunit protein.
Length = 320
Score = 144 bits (350), Expect = 1e-34
Identities = 70/130 (53%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Frame = +3
Query: 123 LTNVALPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAMRKTWSKFGD 302
L LPPP EV+ +K VTEYK D D KK KIVRT++IE R SK++A RK W KFG+
Sbjct: 48 LPGAPLPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIETRKASKAVARRKNWKKFGN 107
Query: 303 SANDKPGPNPATTNVSEDVFMQFITSKEE-SQRPDDGELDGLKPQSNNVIFKCRICQGDH 479
S D PGPN ATT VS+DV M FITSKE+ + + ++ ++ LK Q I CRIC+GDH
Sbjct: 108 SEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQEEEDPMNKLKGQK---IVSCRICKGDH 164
Query: 480 MTINCPFKHT 509
T CP+K T
Sbjct: 165 WTTRCPYKDT 174
>BC040275-1|AAH40275.1| 1181|Homo sapiens RASGRF1 protein protein.
Length = 1181
Score = 30.7 bits (66), Expect = 3.6
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = -2
Query: 512 LGMLEWTIYSHVITLTDTALEDDIVGLWLKPIKLTIIRSLTFLFASDELHKYIF 351
+ L ++S+ + T + D ++ ++ KPI RSL LFAS + +K ++
Sbjct: 655 IDFLNTFLHSYRVFTTAIVVLDKLITIYKKPISAIPARSLELLFASGQNNKLLY 708
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,798,182
Number of Sequences: 237096
Number of extensions: 1465952
Number of successful extensions: 3604
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3596
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5477474182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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