Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_J09
(552 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 63 1e-10
U97593-1|AAB52875.1| 715|Caenorhabditis elegans Hypothetical pr... 25 0.72
Z81494-4|CAB04050.2| 319|Caenorhabditis elegans Hypothetical pr... 30 0.96
AF002198-7|AAF99935.1| 693|Caenorhabditis elegans Hypothetical ... 30 0.96
Z78545-3|CAB01767.1| 306|Caenorhabditis elegans Hypothetical pr... 29 2.9
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr... 29 2.9
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr... 29 2.9
U39993-1|AAA81086.1| 594|Caenorhabditis elegans Hypothetical pr... 29 2.9
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 3.9
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 3.9
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 3.9
Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical pr... 28 5.1
AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1 ... 28 5.1
Z49068-9|CAA88860.1| 556|Caenorhabditis elegans Hypothetical pr... 27 6.8
U29379-7|ABC71826.1| 710|Caenorhabditis elegans Patterned expre... 27 6.8
U29379-6|AAF99981.3| 677|Caenorhabditis elegans Patterned expre... 27 6.8
U29379-5|ABC71825.1| 777|Caenorhabditis elegans Patterned expre... 27 6.8
Z77663-14|CAB01214.2| 568|Caenorhabditis elegans Hypothetical p... 27 9.0
AJ581300-1|CAE46113.1| 568|Caenorhabditis elegans flavin monoox... 27 9.0
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 63.3 bits (147), Expect = 1e-10
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Frame = +3
Query: 204 DNKKVKIVRTYKIEKRVVSKSIAMRKTWSKFGDSANDKPGPNPATTNVSEDVFMQFITSK 383
D + K+V +K+ + V K +A RK W KFG + GP ATT V+E+V MQF ++
Sbjct: 39 DGVRWKVVTQFKVINKRVPKVVADRKKWVKFGSCKGEPAGPQVATTYVAEEVDMQFTRNR 98
Query: 384 EESQRPD-DGELDGLKPQSNNVIFKCRICQG-DHMTINCPFK 503
Q D + K S CR C+G DH + +CP+K
Sbjct: 99 AGEQILDVQEDKQTAKTTSRE---HCRHCKGNDHWSTHCPYK 137
>U97593-1|AAB52875.1| 715|Caenorhabditis elegans Hypothetical
protein C46G7.3 protein.
Length = 715
Score = 25.4 bits (53), Expect(2) = 0.72
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +3
Query: 198 DNDNKKVKIVRTYKIEKRVVSKSIAMRKTWSKFGDSANDKPGPNPATTNV 347
DND K + E ++ S A+R T G + PGP P T +
Sbjct: 557 DNDRPKNNKLSPTVTEGHQITMSEALRATLEHDGYETHWTPGPGPDLTRL 606
Score = 23.8 bits (49), Expect(2) = 0.72
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 456 CRICQGDHMTINCPFKHTQIAQTNANE 536
C+IC H + CP ++ + AN+
Sbjct: 621 CQICGVGHTLLRCPLASFEVRRFIAND 647
>Z81494-4|CAB04050.2| 319|Caenorhabditis elegans Hypothetical
protein F02E9.3 protein.
Length = 319
Score = 30.3 bits (65), Expect = 0.96
Identities = 22/81 (27%), Positives = 38/81 (46%)
Frame = +3
Query: 117 LKLTNVALPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAMRKTWSKF 296
L+ + + PPS LK + K D +K+ K + K KR+ S++I + K WS+F
Sbjct: 49 LRSSKSSSSPPSRNSSLNLKTL---KKDRKSKEGKPKSSSKHGKRMTSRAIHVSKKWSQF 105
Query: 297 GDSANDKPGPNPATTNVSEDV 359
+ + T + ED+
Sbjct: 106 NRREDKTDYLDDETMQILEDL 126
>AF002198-7|AAF99935.1| 693|Caenorhabditis elegans Hypothetical
protein F35F10.10 protein.
Length = 693
Score = 30.3 bits (65), Expect = 0.96
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +3
Query: 189 YKYD-NDNKKVK--IVRTYKIEKRVVSKSIAMRKTWSKFGDSANDKPGPNPATTNVSE 353
+K D ND K V+ ++ Y E ++SK+I RKT K + D P + ATT VSE
Sbjct: 422 FKTDVNDRKTVETFLIEVYWRES-ILSKAILHRKT-CKLKTCSEDTPETSTATTTVSE 477
>Z78545-3|CAB01767.1| 306|Caenorhabditis elegans Hypothetical
protein M03B6.4 protein.
Length = 306
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +3
Query: 225 VRTYKIEKRVVSKSIAMRKTWSKFGDSANDKP----GPNPATTNVSE 353
+ YKI +S + RKT KFGD A D P NP TT+ E
Sbjct: 6 ISQYKINISSLSSPLK-RKTTRKFGDDAYDSPKYFMEGNPTTTSTFE 51
>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
protein T19D12.4b protein.
Length = 1015
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 153 EVVENGLKIVTEYKYDNDNKKVKIV 227
+ V+ K+V +YKY NDN +V I+
Sbjct: 394 QYVDFAKKLVAQYKYGNDNTRVGII 418
>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
protein T19D12.4a protein.
Length = 1028
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 153 EVVENGLKIVTEYKYDNDNKKVKIV 227
+ V+ K+V +YKY NDN +V I+
Sbjct: 407 QYVDFAKKLVAQYKYGNDNTRVGII 431
>U39993-1|AAA81086.1| 594|Caenorhabditis elegans Hypothetical
protein F47E1.3 protein.
Length = 594
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 346 CLKMYLCNSSLAKRKVNDLMMVSLMGLSHNPTMSSS 453
CL+ +L N S K ++ND M+ + +H P SSS
Sbjct: 33 CLRQHLENHSTMK-ELNDFSMIEISSQTHLPMCSSS 67
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 238 KSRSVLYLRVLQCVKLGASLETLPMISLDQIQL 336
+S ++ L V Q KLGAS ETL I D I++
Sbjct: 3296 ESEQIIELNVPQSPKLGASHETLVPIGQDDIEV 3328
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 238 KSRSVLYLRVLQCVKLGASLETLPMISLDQIQL 336
+S ++ L V Q KLGAS ETL I D I++
Sbjct: 3296 ESEQIIELNVPQSPKLGASHETLVPIGQDDIEV 3328
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 238 KSRSVLYLRVLQCVKLGASLETLPMISLDQIQL 336
+S ++ L V Q KLGAS ETL I D I++
Sbjct: 3296 ESEQIIELNVPQSPKLGASHETLVPIGQDDIEV 3328
>Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical
protein F42E11.4 protein.
Length = 250
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = +3
Query: 162 ENGLKIVTEYKYDNDNKKV----KIVRTYKIEKRVVSKSIAMRKTWSKFGDSANDKPGPN 329
+N K + E K ++ +K + K V+ + ++ +K + + WSK + ++ P
Sbjct: 165 DNKFKKMAEAKKEDGSKNLRNNLKTVKKESVFTQIANKKKSDKPEWSKKKEEKKEESAPE 224
Query: 330 PATTNVSEDVFMQFITSKEESQRPDD 407
P V E+ +EE + ++
Sbjct: 225 PVIEPVEEEETAASEGEEEEEEADEE 250
>AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1
protein.
Length = 250
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = +3
Query: 162 ENGLKIVTEYKYDNDNKKV----KIVRTYKIEKRVVSKSIAMRKTWSKFGDSANDKPGPN 329
+N K + E K ++ +K + K V+ + ++ +K + + WSK + ++ P
Sbjct: 165 DNKFKKMAEAKKEDGSKNLRNNLKTVKKESVFTQIANKKKSDKPEWSKKKEEKKEESAPE 224
Query: 330 PATTNVSEDVFMQFITSKEESQRPDD 407
P V E+ +EE + ++
Sbjct: 225 PVIEPVEEEETAASEGEEEEEEADEE 250
>Z49068-9|CAA88860.1| 556|Caenorhabditis elegans Hypothetical
protein K01C8.9 protein.
Length = 556
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 180 VTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAMRKTWSKFG-DSANDKPGPNPATTNVSED 356
+ +Y +K+V + YKIEK+V + ++K K G + +K P + E+
Sbjct: 1 MAKYCLKKTSKRVSCAKRYKIEKKVRDHNRKVKKEAKKNGTTNKKEKTISVPNSCPFKEE 60
Query: 357 VFMQFITSKEE 389
+ +Q +E+
Sbjct: 61 ILVQAEQEREK 71
>U29379-7|ABC71826.1| 710|Caenorhabditis elegans Patterned
expression site protein22, isoform c protein.
Length = 710
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 226 LGPTKSRSVLYLRVLQCVKLGASLETLPMISLDQIQLRQM 345
LG K+ VL + + CV G LPM+ L++I+ ++M
Sbjct: 228 LGWQKTIWVLAVMIFSCVFYGYLYRPLPMVDLNEIRDQEM 267
>U29379-6|AAF99981.3| 677|Caenorhabditis elegans Patterned
expression site protein22, isoform a protein.
Length = 677
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 226 LGPTKSRSVLYLRVLQCVKLGASLETLPMISLDQIQLRQM 345
LG K+ VL + + CV G LPM+ L++I+ ++M
Sbjct: 173 LGWQKTIWVLAVMIFSCVFYGYLYRPLPMVDLNEIRDQEM 212
>U29379-5|ABC71825.1| 777|Caenorhabditis elegans Patterned
expression site protein22, isoform b protein.
Length = 777
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 226 LGPTKSRSVLYLRVLQCVKLGASLETLPMISLDQIQLRQM 345
LG K+ VL + + CV G LPM+ L++I+ ++M
Sbjct: 228 LGWQKTIWVLAVMIFSCVFYGYLYRPLPMVDLNEIRDQEM 267
>Z77663-14|CAB01214.2| 568|Caenorhabditis elegans Hypothetical
protein F53F4.5 protein.
Length = 568
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 65 IGIMSPADEIQSSWADEVEIDQCCPPT 145
IG ++P EIQS WA V +C P+
Sbjct: 361 IGSIAPISEIQSRWAARVFAGRCQLPS 387
>AJ581300-1|CAE46113.1| 568|Caenorhabditis elegans flavin
monooxygenase protein.
Length = 568
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 65 IGIMSPADEIQSSWADEVEIDQCCPPT 145
IG ++P EIQS WA V +C P+
Sbjct: 361 IGSIAPISEIQSRWAARVFAGRCQLPS 387
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,593,355
Number of Sequences: 27780
Number of extensions: 249342
Number of successful extensions: 726
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -