Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J09
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   3.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   6.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.3  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 374 DELHKYIFRHICRSWIWSRLIIGRVSKLAPSF 279
           +++  Y FRHI    I +  +I   SK  P F
Sbjct: 368 EDISDYKFRHITEITILTVQLIVEFSKRLPGF 399


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = +3

Query: 423 LKPQSNNVIFKCRICQGDHMTINCPFKHTQIAQTN 527
           L P +NN+ +      G +     PF  +Q  + N
Sbjct: 256 LSPVTNNLYYSPLASHGLYYVNTAPFMKSQFGENN 290


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = -1

Query: 165 FQLLQMGVGGQHWSISTSSAHED 97
           + L++  +GG+ W++     H D
Sbjct: 442 YMLMEACLGGELWTVLRDKGHFD 464


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,608
Number of Sequences: 438
Number of extensions: 2997
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)